Table 1. Reference data used to perform the analyses and to evaluate the performance of mSWEEP, metakallisto, and BIB.

Clonal complexes are defined as either single-locus variants from the central sequence type ( Campylobacter jejuni, Campylobacter coli) or double-locus variants ( Klebsiella pneumoniae and Escherichia coli). The Staphylococcus epidermidis lineages were identified in the original study with the BAPS clustering algorithm.

Grouping	Species	Sequences	Test sequences	Groups	Test groups
Clonal complex	Campylobacter coli	120	27	1	1
	Campylobacter jejuni	462	73	13	11
	Escherichia coli	1509	188	132	54
	Klebsiella pneumoniae	1351	129	79	39
Species	Klebsiella quasipneumoniae	9	3	1	1
	Klebsiella variicola	12	3	1	1
	Staphylococcus aureus	181		1
Lineage	Staphylococcus epidermidis	143	81	3	3
Species	Multiple species with single sequences	28		28
	total	3815	504	259	110