Table 4.

Precision and recall for our proposed model

	Germline sequence			Cancer sequence
	Precision	Recall	F-measure	Precision	Recall	F-measure
Breast	87.1% (2.8%)	91.9% (1.6%)	89.0% (1.2%)	89.1% (1.6%)	87.2% (2.2%)	87.8% (0.7%)
Colorectal	87.8% (1.7%)	94.0% (1.6%)	90.6% (0.8%)	86.1% (3.8%)	90.8% (2.9%)	87.5% (2.2%)
Uterus	90.0% (1.8%)	72.8% (6.8%)	78.0% (5.5%)	84.9% (3.1%)	71.4% (2.8%)	76.6% (1.0%)
Brain	88.3% (4.4%)	58.6% (5.2%)	67.9% (2.2%)	77.3% (2.5%)	75.9% (3.5%)	75.6% (1.5%)
Lung	69.1% (4.9%)	79.9% (7.2%)	69.8% (2.7%)	73.7% (3.1%)	75.6% (4.0%)	73.4% (1.8%)
Kidney	81.9% (2.7%)	81.3% (2.0%)	81.3% (1.5%)	70.0% (3.8%)	76.0% (5.0%)	71.2% (3.3%)
Prostate	76.4% (6.1%)	67.3% (7.2%)	66.0% (3.7%)	72.2% (2.7%)	65.5% (3.5%)	68.1% (2.3%)

The experiment is replicated for 10 times and the number in parenthesis standard error. The bolded number are those that significantly improved in cancer sequence compared to germline sequence