Table 3.

QTDT results regarding the associations between the single nucleotide polymorphisms and phenotypic variations.

Genotype	rs2447995	rs10835171	rs10835173	rs6484295	rs7936621	rs12787344	rs4128868	rs4074516	rs4542364	rs11030014	rs16917037	rs4923447	rs10835187
Test of population stratification
Femoral neck BMD	0.707	0.892	0.758	0.880	0.972	0.661	0.398	0.048	0.317	0.062	0.896	0.247	0.477
Total hip BMD	0.649	0.839	0.832	0.949	0.445	0.522	0.877	0.139	0.721	0.148	0.947	0.292	0.657
Lumbar spine BMD	0.295	0.668	0.359	0.869	0.141	0.693	0.470	0.112	0.313	0.040	0.207	0.048	0.231
TFM	0.635	0.233	0.718	0.564	0.945	0.674	0.731	0.740	1.000	0.553	0.691	0.041	0.073
TLM	0.801	0.508	0.598	0.821	0.662	0.725	0.641	0.315	0.676	0.491	0.525	0.098	0.563
PFM	0.661	0.496	0.990	0.863	0.686	0.511	0.896	0.652	0.973	0.546	0.962	0.013	0.040
PLM	0.632	0.258	0.632	0.503	0.992	0.784	0.822	0.623	0.713	0.647	0.735	0.017	0.030
Trunk fat mass	0.557	0.164	0.528	0.412	0.600	1.000	0.448	0.774	9.00E-29	0.621	0.387	0.088	0.050
BMI	0.927	0.118	0.265	0.264	0.668	0.888	0.513	0.912	0.417	0.512	0.233	0.703	0.194
Tests for total association
Femoral neck BMD	0.189	0.684	0.669	0.722	0.003	0.025	0.025	0.927	0.750	0.011	0.037	0.165	0.032
Total hip BMD	0.381	0.994	0.897	0.525	0.013	0.068	0.066	0.816	0.775	0.024	0.195	0.113	0.015
Lumbar spine BMD BMD	0.969	0.836	0.899	0.718	0.058	0.109	0.208	0.570	0.269	0.037	0.169	0.470	0.084
TFM	0.569	0.316	0.487	0.224	0.867	0.576	0.813	0.121	0.637	0.907	0.855	0.883	0.790
TLM	0.193	0.350	0.403	0.157	0.272	0.333	0.199	0.497	0.647	0.146	0.630	0.641	0.591
PFM	0.766	0.494	0.806	0.469	0.633	0.235	0.748	0.196	0.552	0.783	0.941	0.715	0.974
PLM	0.827	0.372	0.647	0.400	0.944	0.542	0.892	0.283	0.762	0.856	0.983	0.898	0.919
Trunk fat mass	7.00E-29	0.208	7.00E-29	0.135	9.00E-29	0.747	9.00E-29	0.223	1.000	9.00E-29	0.7162	0.805	0.623
BMI	0.389	0.230	0.377	0.131	0.431	0.778	0.382	0.106	0.704	0.813	0.738	0.673	0.993
Test for within-family association
Femoral neck BMD	0.521	0.829	0.914	0.713	0.031	0.157	0.258	0.166	0.647	0.618	0.096	0.071	0.311
Total hip BMD	0.772	0.899	0.964	0.658	0.020	0.071	0.137	0.245	0.968	0.563	0.346	0.061	0.159
Lumbar spine BMD BMD	0.434	0.662	0.600	0.867	0.017	0.140	0.155	0.518	0.915	0.982	0.062	0.059	0.691
TFM	0.458	0.124	0.454	0.193	0.892	0.485	0.681	0.177	0.720	0.740	0.704	0.130	0.263
TLM	0.481	0.255	0.331	0.222	0.276	0.337	0.205	0.847	0.968	0.591	0.436	0.136	0.430
PFM	0.601	0.336	0.863	0.508	0.533	0.183	0.743	0.209	0.683	0.536	0.930	0.047	0.141
PLM	0.618	0.157	0.509	0.283	0.954	0.522	0.802	0.262	0.973	0.653	0.815	0.080	0.144
Trunk fat mass	6.00E-29	0.063	6.00E-29	0.094	8.00E-29	0.767	7.00E-29	0.348	0.829	1.00E-28	0.395	0.199	0.270
BMI	0.515	0.052	0.159	0.061	0.392	0.762	0.278	0.271	0.767	0.760	0.296	0.570	0.356
P1000 permutation of within-family
Femoral neck BMD	0.487	0.837	0.923	0.740	0.038	0.157	0.297	0.175	0.610	0.597	0.064	0.097	0.341
Total hip BMD	0.733	0.908	0.960	0.691	0.029	0.080	0.157	0.271	0.965	0.576	0.312	0.105	0.174
Lumbar spine BMD BMD	0.437	0.677	0.602	0.859	0.031	0.139	0.191	0.519	0.924	0.985	0.054	0.071	0.695
TFM	0.537	0.127	0.466	0.168	0.963	0.470	0.680	0.237	0.761	0.795	0.757	0.147	0.366
TLM	0.484	0.265	0.354	0.261	0.362	0.380	0.269	0.877	0.957	0.591	0.404	0.215	0.411
PFM	0.618	0.309	0.862	0.478	0.458	0.104	0.675	0.227	0.711	0.534	0.930	0.056	0.135
PLM	0.628	0.117	0.462	0.244	0.933	0.448	0.770	0.263	0.973	0.643	0.821	0.067	0.138
Trunk fat mass	0.279	0.045	0.233	0.064	0.452	0.802	0.382	0.328	0.877	0.845	0.392	0.155	0.292
BMI	0.537	0.050	0.165	0.043	0.394	0.739	0.267	0.325	0.792	0.797	0.317	0.600	0.401

Bold indicates a significant P-value (<0.05).