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. 2021 Apr 27;37(20):3654–3656. doi: 10.1093/bioinformatics/btab247

Fig. 1.

Fig. 1.

Slopegraph of three different P-value estimate algorithms for KLD CIF divergences of L.enriettii clade tRNA genes (n =160 genes) against human tRNA genes (n =431 genes). PECDF is the naive Monte Carlo method with 10 000 permutations per feature, using pseudo-counts when there are fewer than S exceedances (by default, 10). PECDF terminates after S exceedances (PECDF) or a maximum of 10 000 permutations, using pseudo-counts unless there are S exceedances. PGPD uses algorithm Approximate with T =500 target permutations and a maximum of 10 000 permutations. Colors show the harmonic mean of the number of sequences containing a given CIF in the two taxa. Points but not lines are jittered against overplotting. See online for color version.

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