TABLE 2.
SNPs leading to premature STOP codons in clades ARG-3 and ARG-4a
| Position | Gene name | Product | SNP |
|---|---|---|---|
| ARG-4 (N = 164) | |||
| 1280667 | ILRI_01209 | Hypothetical protein | G94A |
| 1747625 | tag | DNA-3-methyladenine glycosylase | T149A |
| 2369884 | rplV b | 50S ribosomal protein L22 | T343A |
| 2406078 | hsaA c | Acyl-CoA dehydrogenase | C55A |
| 2448271 | yghA c | Short-chain dehydrogenase | C250A |
| 2730310 | cocE c | X-pro dipeptydil peptidase (S15) family protein | C715T |
| 309872 | geh | Glycerol ester hydrolase | C106T |
| ARG-3 (N = 19) | |||
| 105294 | phnC | Phosphate import ATP binding protein | G460A |
| 1283886 | ILRI_01212 | Hypothetical protein | G73T |
| 1635067 | ILRI_01607 | Competence ComGF-like protein | G352A |
| 2053078 | map_3 | MHC class II antigen-like protein | G1603A |
| 2085979 | mutS_2 | MutS-related protein | G237A |
| 2508488 | ydaG c | General stress protein 26 | C271T |
a
Only SNPs present in whole genomes after removing MGEs and recombination regions are shown. Positions are in reference to the ST30 S. aureus ILRI_Eymole1/1 reference genome. Genes without an annotated name are in reference to CDS of the same reference genome by their locus tag.
b
Genes involved in protein synthesis.
c
Genes described to be affected by LCuFFAs.