Table 1.
SARS-CoV-2samples used for the phylogenetic analysis.
| Region | Name | Accession | Date | Clade |
|---|---|---|---|---|
| West Africa | hCoV-19/Gambia/GC19-029/2020 | EPI_ISL_428857 | 4/20/2020 | GH |
| hCoV-19/Senegal/611/2020 | EPI_ISL_420076 | 3/20/2020 | GH | |
| hCoV-19/Senegal/003/2020 | EPI_ISL_418206 | 2/28/2020 | GH | |
| hCoV-19/Senegal/016/2020 | EPI_ISL_418207 | 3/2/2020 | GH | |
| hCoV-19/Senegal/026/2020 | EPI_ISL_418209 | 3/3/2020 | GH | |
| hCoV-19/Senegal/020/2020 | EPI_ISL_418208 | 3/4/2020 | GH | |
| hCoV-19/Senegal/382/2020 | EPI_ISL_420073 | 3/19/2020 | GH | |
| hCoV-19/Senegal/370/2020 | EPI_ISL_420072 | 3/18/2020 | GH | |
| hCoV-19/Nigeria/OY008-CV29/2020 | EPI_ISL_455429 | 3/27/2020 | GH | |
| hCoV-19/Nigeria/KW017-CV24/2020 | EPI_ISL_455362 | 4/10/2020 | GH | |
| hCoV-19/Ghana/2333_S5/2020 | EPI_ISL_422394 | 3/27/2020 | GH | |
| hCoV-19/Ghana/2986_S10/2020 | EPI_ISL_422401 | 3/31/2020 | GH | |
| hCoV-19/Ghana/1622_S2/2020 | EPI_ISL_422384 | 3/24/2020 | GH | |
| hCoV-19/Nigeria/OS060-CV9/2020 | EPI_ISL_455419 | 3/29/2020 | GH | |
| hCoV-19/Senegal/610/2020 | EPI_ISL_420075 | 3/20/2020 | GH | |
| hCoV-19/Senegal/328/2020 | EPI_ISL_420071 | 3/17/2020 | GH | |
| hCoV-19/Senegal/640/2020 | EPI_ISL_420079 | 3/20/2020 | GH | |
| hCoV-19/Gambia/GC19-015/2020 | EPI_ISL_428855 | 3/17/2020 | GR | |
| hCoV-19/Ghana/2914_S8/2020 | EPI_ISL_422399 | 3/30/2020 | GR | |
| hCoV-19/Nigeria/NG57752/2020 | EPI_ISL_462992 | 2020-03 | GR | |
| hCoV-19/Ghana/1565_S13/2020 | EPI_ISL_422404 | 3/24/2020 | GR | |
| hCoV-19/Nigeria/Lagos01/2020 | EPI_ISL_413550 | 2/27/2020 | GR | |
| hCoV-19/Senegal/315/2020 | EPI_ISL_420070 | 3/17/2020 | G | |
| hCoV-19/Senegal/600/2020 | EPI_ISL_420074 | 3/20/2020 | G | |
| hCoV-19/Senegal/073/2020 | EPI_ISL_418210 | 3/10/2020 | G | |
| hCoV-19/Senegal/082/2020 | EPI_ISL_418211 | 3/11/2020 | G | |
| hCoV-19/Senegal/087/2020 | EPI_ISL_418212 | 3/11/2020 | G | |
| hCoV-19/Senegal/094/2020 | EPI_ISL_418213 | 3/12/2020 | G | |
| hCoV-19/Senegal/119/2020 | EPI_ISL_418215 | 3/12/2020 | G | |
| hCoV-19/Ghana/2853_S7/2020 | EPI_ISL_422398 | 3/29/2020 | G | |
| hCoV-19/Senegal/139/2020 | EPI_ISL_418217 | 3/13/2020 | G | |
| hCoV-19/Ghana/2944_S9/2020 | EPI_ISL_422400 | 3/30/2020 | G | |
| hCoV-19/Ghana/1659_S14/2020 | EPI_ISL_422405 | 3/25/2020 | G | |
| hCoV-19/Senegal/102/2020 | EPI_ISL_418214 | 3/12/2020 | G | |
| hCoV-19/Senegal/618/2020 | EPI_ISL_420077 | 3/20/2020 | S | |
| hCoV-19/Senegal/136/2020 | EPI_ISL_418216 | 3/13/2020 | S | |
| hCoV-19/Senegal/620/2020 | EPI_ISL_420078 | 3/20/2020 | S | |
| hCoV-19/Ghana/1651_S3/2020 | EPI_ISL_422387 | 3/25/2020 | S | |
| hCoV-19/Ghana/2850_S15/2020 | EPI_ISL_422406 | 3/29/2020 | S | |
| hCoV-19/Ghana/2828_S6/2020 | EPI_ISL_422397 | 3/29/2020 | S | |
| hCoV-19/Ghana/3177_S12/2020 | EPI_ISL_422403 | 3/30/2020 | S | |
| hCoV-19/Ghana/3176_S11/2020 | EPI_ISL_422402 | 3/30/2020 | S | |
| hCoV-19/Nigeria/OS030-CV5/2020 | EPI_ISL_455415 | 3/29/2020 | S | |
| hCoV-19/Nigeria/OS085-CV14/2020 | EPI_ISL_455424 | 3/29/2020 | S | |
| hCoV-19/Nigeria/OS055-CV8/2020 | EPI_ISL_455418 | 3/29/2020 | S | |
| hCoV-19/Nigeria/OS070-CV11/2020 | EPI_ISL_455422 | 3/29/2020 | S | |
| hCoV-19/Nigeria/OS075-CV12/2020 | EPI_ISL_455423 | 3/29/2020 | S | |
| hCoV-19/Nigeria/OS122-CV18/2020 | EPI_ISL_455426 | 3/29/2020 | S | |
| hCoV-19/Nigeria/OS125-CV20/2020 | EPI_ISL_455427 | 3/29/2020 | S | |
| hCoV-19/Gambia/GC19-026/2020 | EPI_ISL_428856 | 3/21/2020 | V | |
| hCoV-19/Nigeria/OG007-CV22/2020 | EPI_ISL_455412 | 3/29/2020 | V | |
| hCoV-19/Nigeria/OY045A-CV35/2020 | EPI_ISL_455431 | 4/2/2020 | V | |
| hCoV-19/Nigeria/OS016-CV3/2020 | EPI_ISL_455413 | 3/27/2020 | V | |
| hCoV-19/Senegal/306/2020 | EPI_ISL_420069 | 3/17/2020 | L | |
| hCoV-19/Ghana/2230_S4/2020 | EPI_ISL_422390 | 3/25/2020 | L | |
| hCoV-19/Nigeria/OY035-CV34/2020 | EPI_ISL_455430 | 4/2/2020 | L | |
| hCoV-19/Ghana/1513_S1/2020 | EPI_ISL_422382 | 3/24/2020 | L | |
| hCoV-19/Nigeria/OS029-CV4/2020 | EPI_ISL_455414 | 3/29/2020 | L | |
| hCoV-19/Nigeria/OS116-CV17/2020 | EPI_ISL_455425 | 3/29/2020 | L | |
| hCoV-19/Nigeria/NG02/2020 | EPI_ISL_450507 | 4/9/2020 | L | |
| Others | hCoV-19/France/HF1463/2020 | EPI_ISL_429968 | 2/21/2020 | GH |
| hCoV-19/England/SHEF-BFD27/2020 | EPI_ISL_416737 | 3/3/2020 | GR | |
| hCoV-19/Brazil/SPBR-13/2020 | EPI_ISL_416035 | 3/5/2020 | GR | |
| hCoV-19/Austria/CeMM0045/2020 | EPI_ISL_437932 | 2/24/2020 | GR | |
| hCoV-19/Netherlands/Berlicum_1363564/2020 | EPI_ISL_413565 | 2/24/2020 | GR | |
| hCoV-19/Italy/CDG1/2020 | EPI_ISL_412973 | 2/20/2020 | G | |
| hCoV-19/Germany/BavPat1/2020 | EPI_ISL_406862 | 1/28/2020 | G | |
| hCoV-19/Italy/PV-5314-N/2020 | EPI_ISL_451307 | 2/21/2020 | G | |
| hCoV-19/Luxembourg/LNS0000001/2020 | EPI_ISL_419562 | 2/29/2020 | G | |
| hCoV-19/DRC/3632/2020 | EPI_ISL_447607 | 4/23/2020 | G | |
| hCoV-19/HongKong/HKU-908a/2020 | EPI_ISL_434569 | 1/27/2020 | V | |
| hCoV-19/DRC/3632/2020 | EPI_ISL_447607 | 4/23/2020 | V | |
| hCoV-19/Wuhan-Hu-1/2019 | EPI_ISL_402125 | 12/31/2019 | L | |
| hCoV-19/USA/CA2/2020 | EPI_ISL_406036 | 1/22/2020 | L | |
| hCoV-19/Wuhan/WH01/2019 | EPI_ISL_406798 | 12/26/2019 | L |