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. 2021 Oct 13;11:745384. doi: 10.3389/fonc.2021.745384

Table 3.

DEGs of SKCM (top 10 upregulation and top 10 downregulation according to p-value).

Gene name Chr Start End Strand Description LogFC p-value
EDNRB 13 77895481 77975529 Endothelin receptor type B 2.66285171 1.25E-13
CRACD 4 56049073 56328625 + Capping protein inhibiting regulator of actin dynamics 2.37323301 2.36E-13
C4orf48 4 2041993 2043970 + Chromosome 4 open reading frame 48 2.54917458 3.99E-13
SLC45A2 5 33946602 33956490 Solute carrier family 45 member 2 3.72836758 1.77E-12
TUBB4A 19 6494319 6502848 Tubulin beta 4A class Iva 4.22450924 2.74E-12
SOX10 22 37970686 37987422 SRY-box transcription factor 10 2.76028069 9.39E-12
BACE2 21 41167801 41282530 + Beta-secretase 2 2.2186336 1.00E-11
TRIB2 2 12716889 12742734 + Tribbles pseudokinase 2 2.32263761 1.31E-11
PLOD3 7 101205977 101218420 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 2.44516108 2.44E-11
PRAME 22 22556806 22568466 PRAME nuclear receptor transcriptional regulator 5.29935881 6.57E-11
TSPAN8 12 71125085 71441898 Tetraspanin 8 −4.4020815 3.94E-14
SLC27A6 5 128538013 129033642 + Solute carrier family 27 member 6 −3.3370382 2.36E-13
MFSD4A-AS1 1 205554272 205569305 MFSD4A antisense RNA 1 −2.803971 2.36E-13
DCD 12 54644589 54648493 Dermcidin −7.7019636 2.80E-13
PIP 7 143132077 143139739 + Prolactin induced protein −6.7613591 3.99E-13
HMGCS2 1 119748002 119768905 3-hydroxy-3-methylglutaryl-CoA synthase 2 −3.0959742 4.45E-13
SCGB2A1 11 62208673 62213943 + Secretoglobin family 2A member 1 −4.9284683 8.57E-13
RERGL 12 18080869 18320107 RERG like −3.5612684 1.12E-12
KRTAP4-6 17 41139433 41140487 Keratin associated protein 4-6 −4.7315792 1.12E-12
KRTAP4-9 17 41105332 41106488 + Keratin associated protein 4-9 −4.5516704 1.77E-12