Table 1.
Epidemiological information related to the four Shigella isolates associated with men who have sex with men (MSM) that were whole genome sequenced with Nanopore and Illumina technologies in this study. S. sonnei MSM clade is reported according to [8] and S. sonnei lineage is included according to [47]
|
Isolate ID |
598 080 |
607 387 |
888 048 |
893 916 |
|---|---|---|---|---|
|
Species |
S. flexneri 3a |
|||
|
Region |
London |
London |
London |
London |
|
Sex |
M |
M |
M |
M |
|
Age |
22 |
50 |
50 |
36 |
|
Receipt date (M/Y) |
08/18 |
09/18 |
02/20 |
02/20 |
|
S. sonnei MSM clade |
2 |
2 |
– |
5 |
|
S. sonnei lineage |
3.7.29.1.4.1 (Global III VN2.KH1.Aus) |
3.7.29.1.4.1 (Global III VN2.KH1.Aus) |
– |
3.6.1.1.2 (CipR.MSM5) |