Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2021 Oct 27;9(2):e01305-21. doi: 10.1128/Spectrum.01305-21

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

Copyright © 2021 Zhang et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

PMC Copyright notice

FIG 3 — Comparative genomic analysis of the virulence and resistance plasmids. (a) Alignment analysis of virulence plasmid sequences among pVir-C1672, pVir-C2051, and previously reported virulence plasmids, including pLVPK (accession no. AY378100) and pTHC11-1 (accession no. AP019549). (b) The region containing resistance genes in pRes-C1672 and pRes-C2051. (c) Comparison of pRes-C1672 and pRes-C2051 resistance plasmids from this study with 10 complete resistance plasmids bearing bla_IMP that originated from K. pneumoniae strains and whose sequences were downloaded from the RefSeq database, as well as pTHC11-2 (accession no. AP019550). The maximum-likelihood phylogenetic tree was built by RaxML from an alignment generated by Roary and filtered to remove recombination using ClonalFrameML. The Interactive Tree Of Life (https://itol.embl.de) was used for visualization. The bootstraps are shown as blue circles on the branches. (d) Alignment analysis of resistance plasmid sequences among pRes-C1672, pRes-C2051, and previously reported resistance plasmids pTHC11-2 (accession no. AP019550) and GCF_008632115.1 (accession no. CM018324).

FIG 3 — Comparative genomic analysis of the virulence and resistance plasmids. (a) Alignment analysis of virulence plasmid sequences among pVir-C1672, pVir-C2051, and previously reported virulence plasmids, including pLVPK (accession no. AY378100) and pTHC11-1 (accession no. AP019549). (b) The region containing resistance genes in pRes-C1672 and pRes-C2051. (c) Comparison of pRes-C1672 and pRes-C2051 resistance plasmids from this study with 10 complete resistance plasmids bearing bla_IMP that originated from K. pneumoniae strains and whose sequences were downloaded from the RefSeq database, as well as pTHC11-2 (accession no. AP019550). The maximum-likelihood phylogenetic tree was built by RaxML from an alignment generated by Roary and filtered to remove recombination using ClonalFrameML. The Interactive Tree Of Life (https://itol.embl.de) was used for visualization. The bootstraps are shown as blue circles on the branches. (d) Alignment analysis of resistance plasmid sequences among pRes-C1672, pRes-C2051, and previously reported resistance plasmids pTHC11-2 (accession no. AP019550) and GCF_008632115.1 (accession no. CM018324).