TABLE 2.
Reference genomes and sequences used in this study
| Serovar | Molecule type | Strain or plasmid name | Accession no.a |
|---|---|---|---|
| Abaetetuba | Complete genome | ATCC 35640 | / |
| Abony | Complete genome | ATCC_BAA_2162 | / |
| Bovismorbificans | Complete genome | ATCC_BAA_1740 | / |
| Branderup | Complete genome | ATCC_BAA_1739 | / |
| Choleraesuis | Complete genome | ATCC 7001 | / |
| Choleraesuis | Complete genome | ATCC 10708 | / |
| Dublin | Complete genome | ATCC 39184 | / |
| Infantis | Complete genome | ATCC 51741 | / |
| Infantis | Complete genome | ATCC_BAA_1675 | / |
| Montevideo | Complete genome | ATCC 8387 | / |
| Montevideo | Complete genome | ATCC_BAA_1735 | / |
| Muenchen | Complete genome | ATCC_BAA_1674 | / |
| Muenchen | Complete genome | ATCC_BAA_1676 | / |
| Muenster | Complete genome | ATCC_BAA_1575 | / |
| Paratyphi A | Complete genome | ATCC 9150 | / |
| Paratyphi B | Complete genome | ATCC BAA_1250 | / |
| Paratyphi B | Complete genome | ATCC_BAA_1584 | / |
| Paratyphi C | Complete genome | ATCC_BAA_1715 | / |
| Poona | Complete genome | ATCC_BAA_1673 | / |
| Sendai | Complete genome | ATCC BAA_1586 | / |
| Senftenberg | Complete genome | ATCC_BAA_1736 | / |
| Senftenberg | Complete genome | ATCC_43845 | / |
| Stanley | Complete genome | ATCC_BAA_1737 | / |
| Stanley | Complete genome | ATCC 7308 | / |
| Thompson | Complete genome | ATCC_BAA_1738 | / |
| Typhi | Complete genome | ATCC 700931 | / |
| Urbana | Complete genome | ATCC 9261 | / |
| Typhimurium | Virulence plasmid | p14028s (from 14028s) | CP001362 |
| Enteritidis | Virulence plasmid | pSENV (from LA5) | HE663166 |
| Bovismorbificans | Virulence plasmid | pVIRBov | HF969016 |
| Enteritidis | Chromosome | LA5 | CAGR00000000 |
| Paratyphi C | Virulence plasmid | pSPCV | CP000858 |
a
/, no data.