TABLE 3.
Predicted change in binding energy relative to Toledo (ΔΔG, in kcal/mol) for interactions between clinical variants of US28 and chemokines or HIV gp120
| Variant | CX3CL1 ΔΔG |
CCL2 ΔΔG |
CCL3 ΔΔG |
CCL4 ΔΔG |
CCL5 ΔΔG |
CCL13 ΔΔG |
gp120 Indoa ΔΔG |
gp120 Ausb ΔΔG |
|---|---|---|---|---|---|---|---|---|
| D15E | −2.8 | −4.3 | +7.1 | −2.6 | −1.3 | +4.0 | +0.5 | +1.3 |
| E18L | +7.4 | +1.6 | +9.7 | +0.7 | +1.9 | −0.8 | −4.6 | −3.9 |
| D15E, E18Lc | +4.0 | −1.4 | +15.0 | −3.5 | −0.7 | +3.2 | −5.3 | −3.7 |
| A19D | −1.2 | −4.6 | +0.2 | +0.2 | −6.6 | −2.6 | −1.0 | −1.3 |
| T21A | +2.4 | +1.8 | +7.5 | +2.2 | +2.8 | +1.9 | −0.3 | +0.1 |
| F25L | +1.6 | +2.4 | +1.5 | +0.5 | +0.4 | −2.4 | +7.1 | +1.2 |
| T21A, F25Lc | +4.1 | +4.3 | +8.7 | +2.3 | +3.1 | −0.6 | +6.5 | +1.5 |
| Y40N | +14.5 | +9.0 | +10.6 | +17.4 | +9.6 | +2.2 | +2.9 | +9.7 |
| G50C | −0.0 | −0.0 | −0.0 | +8.0 | +0.8 | −0.0 | −0.0 | +0.0 |
| N170D | −0.4 | +4.5 | +2.2 | +2.1 | −0.1 | −4.4 | −1.8 | −2.4 |
| R267K | +0.9 | +0.9 | +0.5 | +0.6 | +0.2 | +0.4 | −0.3 | +0.3 |
Indonesian HIV isolate.
Australian HIV isolate.
Double mutations tested as alleles were universally coinherited.