Table 3.
Genes in the Fragaria chloroplast genome.
| Category | Gene group | Gene name |
|---|---|---|
| Photosynthesis | Subunits of photosystem I | psaA, pasB, psaC, psaI, psaJ |
| Subunits of photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, pabL, psbM, psbN, psbT, psbZ | |
| Subunits of NADH dehydrogenase | ndhAa, ndhBa,c, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
| Subunits of cytochrome b/f complex | petA, petBa, petDa, petG, petL, petN | |
| Subunits of ATP synthase | atpA, atpB,atpE,atpF, atpH, atpI | |
| Large subunit of rubisco | rbcL | |
| Self-replication | Large subunit of ribosome | rpl2a,c, rpl14, rpl16a, rpl20, rpl22a, rpl23c, rpl32, rpl33, rpl36 |
| Small subunit of ribosome | rps2, rps3, rps4, rps7c, rps8, rps11, rps12a,c, rps14, rps15, rps16a, rps18, rps19 | |
| Subunits of RNA polymerase | rpoA, rpoB, rpoC1a, rpoC2 | |
| Ribosomal RNA genes | rrn16c, rrn23c, rrn4.5c, rrn5c | |
| Transfer RNA genes | trnA-UGCa,c, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCCa, trnG-UCC, trnH-GUG, trnI-CAUc, trnI-GAUa,c, trnK-UUUa, trnL-CAAc, trnL-UAAa, trnL-UAG, trnfM-CAU, trnM-CAU, trnN-GUUc, trnP-UGG, trnQ-UUG, trnR-ACGc, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GACc, trnV-UACa, trnW-CCA, trnY-GUA | |
| Other genes | Maturase | matK |
| Protease | clpP b | |
| Envelope membrane protein | cemA | |
| Acetyl-CoA carboxylase | accD | |
| c-type cytochrome synthesis gene | ccsA | |
| Genes of unknown function | Conserved open reading frames | ycf1c, ycf2c, ycf3b, ycf4 |
a
Gene with one intron.
b
Gene with two introns.
c
Genes with two copies.