Table 1.

Identified miRNAs with significant differential expression in Ziyu44.

	Ziyu44				JNXN
		M.oryzae treated				M.oryzae treated
miRNA ID	0 h	3 h	10 h	22 h	0 h	3 h	10 h	22 h
Up-regulated in Ziyu44
osa-miR2877	21	108	71	67	50	19	35	32
osa-miR1432-3p	5	23	59	17	27	43	23	11
osa-miR7695-5p	63	43	206	90	69	61	57	38
osa-miR5082	39	97	137	258	53	55	49	28
osa-miR159f	501	962	772	1,377	997	473	485	345
osa-miR399j	24	166	236	224	125	79	90	64
osa-miR393b-3p	1,292	3,078	2,904	1,635	1,445	2,127	2,737	2,603
osa-miR408-3p	104	353	218	163	329	284	289	232
osa-miR528-5p	260	812	649	526	997	740	982	730
osa-miR5811	9	13	25	29	13	6	6	6
miR7767	45	74	106	95	81	48	35	35
osa-miR159a.1	164,035	283,867	280,782	397,187	296,298	160,730	153,545	149,179
osa-miR398b	35	113	88	159	80	98	139	119
Down-regulated in Ziyu44
osa-miR156b-3p	554	254	215	79	35	145	165	99
osa-miR156h/f/l-3p	1,713	2,308	1,451	617	2,303	5,697	6,089	4,237
osa-miR156b-5p/c-5p/g-5p	8,707	7,389	4,353	5,933	2,677	10,221	10,240	8,191
osa-miR156c-3p	1,148	1,983	982	489	1,375	3,293	4,046	3,572
osa-miR156g-3p	1,149	1,985	984	491	1,377	3,294	4,051	3,577
osa-miR156l-5p	71	47	25	39	6	24	17	15
osa-miR1883a/b	230	89	55	74	80	112	120	138
osa-miR1862a/b/c	231	234	74	102	77	152	202	192
osa-miR1862d	2,961	4,121	2,222	1,382	1,136	1,561	1,665	1,531
osa-miR167h-3p	210	273	102	79	114	353	284	136
osa-miR167b	4,293	3,056	1,974	1,066	3,083	3,338	3,987	4,827
osa-miR167h-5p/d-5p/f/g/j	130,215	79,912	48,006	62,794	65,122	68,797	72,928	91,653
osa-miR167a-5p/c-5p	4,197	3,027	1,960	1,034	3,052	3,266	3,923	4,756
osa-miR167e-3p/i-3p	85	77	44	22	28	157	149	116
osa-miR167h-3p	210	273	102	79	114	353	284	136
osa-miR1878	160	159	75	40	49	126	116	141
osa-miR166i-3p	164	240	96	47	93	146	123	108
osa-miR166a/b/c/d-3p/f	16,508	27,178	11,945	7,610	14,551	15,884	18,738	18,537
osa-miR166g-3p	2,864	3,764	1,847	1,104	1,981	2,388	2,779	2,741
osa-miR166h-3p	1,428	1,971	795	467	963	1,243	1,450	1,477
osa-miR166k-3p/l-3p	5,561	4,633	2,005	1,577	2,970	4,458	5,233	5,388
osa-miR166m	814	845	434	213	554	728	890	682
osa-miR166a-5p	32	20	10	7	12	22	18	14
osa-miR166e-5p	30	18	9	7	11	21	17	13
osa-miR166j-5p	227	70	59	92	234	230	136	108
osa-miR396e-3p	95	40	26	30	35	171	166	141
osa-miR396f-3p	431	515	184	188	390	228	331	264
osa-miR396c-5p	13,621	12,409	6,470	3,031	7,848	14,254	14,960	12,668
osa-miR162a	1,716	2,397	1,551	850	1,003	1,633	1,717	1,659
osa-miR169e	637	231	249	291	102	109	158	77
osa-miR395	1,101	562	439	579	491	715	668	608
osa-miR1870-3p	82	54	46	26	63	89	81	85
osa-miR1846d-5p	32	23	15	16	14	27	38	32
osa-miR1849	98	105	77	39	77	118	96	95
osa-miR1856	46	30	19	24	41	93	94	122
osa-miR1863a	426	723	850	141	1,186	1,015	730	952
osa-miR1863b.2	46	70	34	21	21	26	29	24
osa-miR2864.1	48	59	36	22	31	89	81	61
osa-miR2871a-5p	78	76	33	31	29	54	41	47
osa-miR2874	21	24	28	9	32	31	26	33
osa-miR2878-3p	141	202	185	70	227	340	278	208
osa-miR2905	17	16	18	7	25	20	22	26
osa-miR396e-5p	168,798	155,797	85,359	65,905	127,244	142,906	150,462	174,831
osa-miR396f-5p	169,041	155,950	85,432	66,138	127,350	143,047	150,676	175,104
osa-miR5542	133	87	37	36	0	0	0	0
osa-miR5788	8,411	6,110	10,711	3,743	7,173	12,957	10,841	8,862
osa-miR7694-5p	36	43	18	17	22	41	42	44
osa-miR810b.1	391	278	255	128	282	642	481	380
osa-miR812r	20	14	14	9	17	20	23	25
osa-miR827	188	230	248	62	321	325	267	259
No miRNA level in Ziyu44
osa-miR1882a/b/c/d/e-5p/f/g/h	0	0	0	1	142	260	313	278
osa-miR812i/h/j/g/p	2	1	1	4	159	67	103	138
osa-miR439a/b/c/e/f/g/h	1	1	1	0	4	27	19	10
Only expressed in Ziyu44
osa-miR3980b-5p	131	381	662	343	0	0	0	0
osa-miR3980b-3p	40	17	27	28	0	0	0	0
osa-miR3980a-5p	131	381	662	343	0	0	0	0
osa-miR3980a-3p	40	17	27	28	0	0	0	0
Up-regulated in Ziyu44 and JNXN
osa-miR1320-5p	21	116	94	65	26	107	125	96
osa-miR1320-3p	100	205	232	168	79	245	421	585
osa-miR169i-5p.2	892	772	2,568	2,516	649	737	1,765	1,624
miR9664	37	74	145	108	52	94	79	60
Down-regulated in Ziyu44 and JNXN
osa-miR166j-5p	272	172	47	40	212	83	75	91

miRNAs with more than 2-fold variation are listed. Reads are normalized to library size and are presented in read per million (RPM).