TABLE 1.
Pan-genome and pan-plasmidome of B. mycoides isolates from northeastern Poland
| Category | No. of genes |
|||||
|---|---|---|---|---|---|---|
| Pan-genomea |
Pan-plasmidomeb |
|||||
| BPN (n = 21) | JAS (n = 14) | All isolates (n = 35) | BPN (n = 21) | JAS (n = 14) | All isolates (n = 35) | |
| Core genes | 3,409 | 3,526 | 3,185 | 4 | 0 | 0 |
| Soft-core genes | 201 | 0 | 201 | 0 | 0 | 0 |
| Shell genes | 3,738 | 3,597 | 4,008 | 859 | 877 | 827 |
| Cloud genes | 8,254 | 6,608 | 12,781 | 4,070 | 3,214 | 6,564 |
| Total genes | 15,602 | 13,731 | 20,175 | 4,933 | 4,091 | 7,391 |
Core genes are common to at least 99% of strains; soft-core genes are present in between 95% and 99% of strains; shell genes are present in between 15% and 95% of strains; cloud genes are present in less than 15% of strains; total genes, a collection of all genes present in the whole set of strains under study.
Core genes, genes present on plasmids harbored by at least 99% of strains; soft-core genes, genes present on plasmids harbored by between 95% and 99% of strains; shell genes, genes present on plasmids harbored by between 15% and 95% of strains; cloud genes, genes present on plasmids harbored by less than 15% of strains; total genes, a collection of all genes present on plasmids harbored by the whole set of strains under study.