TABLE 1.
West Nile Virus NY99 and Héja sequencing statistics
Parametera | Data for isolate: |
|
---|---|---|
NY99 | Héja | |
GenBank accession no. | MZ605381 | MZ605382 |
BioProject accession no. | PRJNA759393 | PRJNA759393 |
WNV lineage | 1 | 2 |
PEI reference material code no.b | 13299/19 | 13300/19 |
Length (bp) | 11,025 | 11,028 |
Potency | 6.25 log10 IU/ml | 5.88 log10 IU/ml |
No. of reads | ||
Raw reads | 2,624,302 | 3,084,270 |
After QC | 2,530,266 | 2,979,944 |
After removal of host sequences | 461,663 | 447,665 |
Total length of reads (bp) | 94,234,259 | 89,678,647 |
Avg read length (bp) | 204 | 200 |
No. of mapped reads | 350,568 | 351,140 |
Proportion mapped | ||
% of raw reads | 13.4 | 11.4 |
% of QC reads | 13.9 | 11.8 |
% of reads after removal of host sequences | 75.9 | 78.4 |
Mean depth of coverage (×) | 6,522 | 6,497 |
QC, quality control.
PEI, Paul-Ehrlich-Institut.