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. 2021 Oct 28;10(43):e00740-21. doi: 10.1128/MRA.00740-21

TABLE 1.

West Nile Virus NY99 and Héja sequencing statistics

Parametera Data for isolate:
NY99 Héja
GenBank accession no. MZ605381 MZ605382
BioProject accession no. PRJNA759393 PRJNA759393
WNV lineage 1 2
PEI reference material code no.b 13299/19 13300/19
Length (bp) 11,025 11,028
Potency 6.25 log10 IU/ml 5.88 log10 IU/ml
No. of reads
 Raw reads 2,624,302 3,084,270
 After QC 2,530,266 2,979,944
 After removal of host sequences 461,663 447,665
Total length of reads (bp) 94,234,259 89,678,647
Avg read length (bp) 204 200
No. of mapped reads 350,568 351,140
Proportion mapped
 % of raw reads 13.4 11.4
 % of QC reads 13.9 11.8
 % of reads after removal of host sequences 75.9 78.4
Mean depth of coverage (×) 6,522 6,497
a

QC, quality control.

b

PEI, Paul-Ehrlich-Institut.