TABLE 2.

NGS absolute abundance at phyla, family, and genus level, reported per treatment and sampling time^a

Taxon
	T0_CTR	T1_CTR	T0_PT	T1_PT	T0_SUL	T1_SUL	T0_TL	T1_TL
Phyla
Actinobacteria	7.23	7.27	6.87	6.90	6.32	5.97	9.20	0.02
Firmicutes	32.76	45.57	40.94	47.54	34.15	55.21	48.51	12.58
Proteobacteria	60.01	47.16	52.18	45.55	59.54	38.82	42.29	87.40
Family
Bifidobacteriaceae	7.23	7.31	6.82	6.65	6.29	5.85	9.12	0.02
Lactobacillaceae	32.68	46.10	40.74	45.98	34.02	53.33	48.09	13.16
Bartonellaceae	36.12	17.46	26.87	8.86	39.66	5.45	19.18	40.02
Neisseriaceae	4.31	3.94	3.94	7.31	3.21	6.07	3.64	5.80
Acetobacteraceae	1.58	1.88	1.83	0.90	0.67	5.60	1.89	5.32
Orbaceae	15.73	18.68	18.52	26.88	14.46	20.37	16.91	28.53
Other_Families	2.36	4.64	1.30	3.44	1.69	3.33	1.18	7.15
Genera
Bifidobacterium	7.23	7.33	6.85	6.64	6.33	5.93	9.32	0.02
Lactobacillus	26.94	33.75	32.49	38.57	27.82	37.78	37.52	9.37
Bombilactobacillus	5.03	11.72	8.66	7.27	6.13	15.74	10.61	0.81
Apilactobacillus	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
Plantilactobacillus	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.03
Bartonella	36.44	17.44	26.65	8.91	39.70	5.67	19.18	40.96
Commensalibacter	0.53	0.38	0.80	0.68	1.17	0.43	0.86	1.47
Snodgrassella	4.32	3.98	4.03	7.36	3.19	6.10	3.65	5.93
Frischella	2.46	3.19	4.60	6.01	3.20	0.98	2.84	4.30
Gilliamella	13.30	15.43	14.07	20.84	11.18	19.56	14.16	24.72
Other_Genera	3.74	6.78	1.84	3.71	1.26	7.81	1.84	12.40

^aCTR, control; PT, Pan-Terramicina; SUL, sulphonamides; TL, tylosin; T0, time zero experiment start; T1, first time point.