TABLE 1.
Putative identification, accession numbers, and statistics for the genome sequences in this study
| Organism | Genome assembly data |
Site of sample collectiona | |||||||
|---|---|---|---|---|---|---|---|---|---|
| GenBank accession no. | SRA accession no. | Assembly size (bp) | No. of contigs | Estimated coverage (×) | Total no. of reads | %GC | N50 (bp) | ||
| Lactiplantibacillus plantarum | |||||||||
| 3.2.8 (Ion Torrent sequencing) | JAGXCA000000000 | SRR14682920 | 3,360,349 | 185 | 525.231 | 8,824,794 | 44 | 67,416 | NC |
| 3.2.8 (Illumina sequencing) | JAGYGQ000000000 | SRR14682926 | 3,379,107 | 137 | 183.78 | 4,311,400 | 44 | 90,946 | NC |
| 7.8.4 | JAGYGR000000000 | SRR14682928 | 3,378,788 | 166 | 75.298 | 1,775,922 | 44 | 114,082 | NC |
| T1R2b | JAGYGT000000000 | SRR14682929 | 3,477,739 | 66 | 207.009 | 5,003,588 | 44 | 370,452 | NC |
| Lactiplantibacillus pentosus | |||||||||
| 1.2.11 | JAGYGW000000000 | SRR14682931 | 3,634,568 | 116 | 262.253 | 6,694,680 | 46 | 120,249 | NC |
| 1.2.13 | JAGYGX000000000 | SRR14682932 | 3,651,781 | 133 | 126.918 | 3,226,422 | 46 | 120,291 | NC |
| 1.8.6 | JAGYGY000000000 | SRR14682933 | 3,640,616 | 130 | 103.011 | 2,602,654 | 46 | 100,780 | NC |
| 1.8.9 | JAHLEP000000000 | SRR14767539 | 3,590,254 | 122 | 160.689 | 4,005,764 | 46 | 118,490 | NC |
| 3.8.24 | JAGYGZ000000000 | SRR14682934 | 3,662,066 | 136 | 96.685 | 2,478,812 | 46 | 118,379 | NC |
| 3.2.37 | JAGYHA000000000 | SRR14682939 | 3,655,808 | 111 | 129.527 | 3,282,012 | 46 | 118,381 | NC |
| LA0445 (Ion Torrent sequencing) | JAGXBZ000000000 | SRR14682919 | 3,745,923 | 170 | 325.425 | 6,175,578 | 46 | 90,946 | NC |
| LA0445 (Illumina sequencing) | JAHLEN000000000 | SRR14767540 | 3,787,716 | 145 | 144.751 | 3,792,958 | 46 | 70,955 | NC |
| MU045 | JAGYHB000000000 | SRR14682940 | 3,787,629 | 141 | 138.382 | 3,626,306 | 46 | 73,822 | NC |
| 7.2.11 | JAGWDS000000000 | SRR14682941 | 3,740,476 | 218 | 162.95 | 4,290,304 | 46 | 53,207 | NC |
| 7.2.23 | JAGWDT000000000 | SRR14682937 | 3,704,147 | 155 | 140.436 | 3,615,368 | 46 | 118,490 | NC |
| 7.2.15 | JAGWDU000000000 | SRR14682936 | 3,714,586 | 116 | 147.609 | 3,837,482 | 46 | 99,059 | NC |
| 1.2.7 | JAGWDV000000000 | SRR14682935 | 3,652,706 | 125 | 154.37 | 3,942,254 | 46 | 118,379 | NC |
| 14.8.42 | JAGXBO000000000 | SRR14682942 | 3,826,173 | 157 | 145.397 | 3,863,260 | 46 | 77,733 | NC |
| 14.2.3 | JAGXBP000000000 | SRR14682946 | 3,720,999 | 136 | 167.201 | 4,329,784 | 46 | 83,353 | NC |
| 14.2.16 | JAGXBQ000000000 | SRR14682945 | 3,762,332 | 156 | 141.166 | 3,710,262 | 46 | 85,333 | NC |
| 7.8.46 | JAGXBR000000000 | SRR14682944 | 3,770,960 | 165 | 181.512 | 4,782,008 | 46 | 85,642 | NC |
| 3.2.36 | JAGXBS000000000 | SRR14682943 | 3,696,926 | 135 | 119.126 | 3,052,726 | 46 | 118,498 | NC |
| 1.8.18 | JAGXBT000000000 | SRR14682951 | 3,697,126 | 165 | 151.843 | 3,973,090 | 46 | 70,228 | NC |
| 3.8.45 | JAGXBU000000000 | SRR14682950 | 3,695,384 | 164 | 125.153 | 3,262,878 | 46 | 99059 | NC |
| 7.2.4 | JAGYGS000000000 | SRR14682957 | 3,676,354 | 184 | 194.933 | 3,169,794 | 46 | 54,739 | NC |
| 30.2.29 | JAGYGU000000000 | SRR14682917 | 3,650,647 | 133 | 103.713 | 3,417,848 | 46 | 118,379 | NC |
| 7.8.11 | JAGYGV000000000 | SRR14682930 | 3,825,364 | 152 | 143.177 | 5,020,878 | 46 | 78,065 | NC |
| 7.8.2 | JAGXBV000000000 | SRR14682948 | 3,790,800 | 99 | 119.032 | 2,657,720 | 46 | 123,926 | MN |
| 7.2.20 | JAGXBW000000000 | SRR14682947 | 3,795,850 | 140 | 127.716 | 3,830,314 | 46 | 81,129 | MN |
| Levilactobacillus brevis | |||||||||
| 14.2.10 | JAGXCC000000000 | SRR14682955 | 2,601,264 | 205 | 237.321 | 4,384,696 | 45 | 36,176 | MN |
| 14.2.24 | JAGXCD000000000 | SRR14682954 | 2,598,957 | 210 | 181.27 | 3,730,730 | 45 | 35,671 | MN |
| 3.2.41 | JAGXIY000000000 | SRR14682923 | 2,538,609 | 173 | 175.342 | 3,320,688 | 46 | 40,908 | MN |
| Pediococcus ethanolidurans | |||||||||
| 7.8.48 | JAGXJC000000000 | SRR14682925 | 2,119,735 | 183 | 331.606 | 5,082,050 | 37 | 35,566 | NC |
| NC579 | JAGXJE000000000 | SRR14682927 | 2,212,777 | 144 | 303.213 | 4,902,456 | 37 | 39,228 | NC |
| Leuconostoc citreum | |||||||||
| 3.8.12 | JAGYGO000000000 | SRR14682949 | 1,913,902 | 25 | 375.513 | 5,132,798 | 39 | 398,202 | MN |
| Leuconostoc fallax | |||||||||
| 1.2.22 | JAGYGP000000000 | SRR14682953 | 1,671,397 | 16 | 262.353 | 5,652,968 | 37 | 1,028,303 | NC |
| Leuconostoc lactis | |||||||||
| 1.2.28 | JAGXCE000000000 | SRR14682952 | 1,712,162 | 25 | 333.01 | 3,977,482 | 43 | 174,610 | MN |
| Leuconostoc mesenteroides | |||||||||
| 1.2.47 | JAHLEO000000000 | SRR14767538 | 2,074,914 | 33 | 284.43 | 4,124,492 | 38 | 253,442 | MN |
| Weissella cibaria | |||||||||
| 3.8.44 | JAGXIZ000000000 | SRR14682922 | 2,425,944 | 27 | 240.751 | 4,048,644 | 45 | 225,548 | NC |
| 7.8.34 | JAGXJD000000000 | SRR14682938 | 2,443,125 | 34 | 212.237 | 3,605,434 | 45 | 198,098 | MN |
| Weissella hellenica | |||||||||
| 1.2.50 | JAGXJA000000000 | SRR14682921 | 1,960,091 | 21 | 453.948 | 6,116,734 | 37 | 322,542 | NC |
| Weissella paramesenteroides | |||||||||
| 3.2.24 | JAGXJB000000000 | SRR14682924 | 1,950,523 | 31 | 237.635 | 3,187,080 | 38 | 238,023 | NC |
| Lactococcus lactis | |||||||||
| 1.8.12 | JAGXCF000000000 | SRR14682956 | 2,599,249 | 42 | 304.64 | 5,436,048 | 35 | 322,542 | NC |
| LA0312 | JAGXIX000000000 | SRR14682918 | 2,357,047 | 31 | 323.83 | 5,242,810 | 35 | 300,240 | NC |
a
Sample collection sites: NC, North Carolina; MN, Minnesota (USA).