Table 2.
Standard curve summaries for RT-qPCR SARS-CoV-2 variant detection and the CDC N1 assay. PCR efficiency and y-intercept cycle threshold (Ct) values were calculated for each of the primer-probe sets against tenfold dilutions of the corresponding DNA oligonucleotides. N1 was tested with both the WT and B.1.1.7 oligonucleotides.
| Sdel WT | Sdel V | SN501Y WT | SN501Y V | ND3L WT | N1 (WT template) | ND3L V | N1 (V template) | |
|---|---|---|---|---|---|---|---|---|
| Slope | −3.43 | −3.36 | −3.56 | −3.39 | −3.47 | −3.57 | −3.28 | −3.34 |
| Intercept | 38.60 | 37.88 | 39.70 | 38.76 | 38.26 | 36.65 | 37.48 | 35.75 |
| RSQ | 1.000 | 0.996 | 0.994 | 0.999 | 0.997 | 1.000 | 0.999 | 0.998 |
| Efficiency | 95.54 | 98.40 | 90.89 | 97.16 | 94.27 | 90.48 | 101.67 | 99.28 |