TABLE 2.

Full list of differentially expressed genes found in S. oralis

Identifier	Gene name	Protein name	Regulation	Fold change	P
13396_Soralis34_01263a	rpsR	30S ribosomal protein S18	Upregulated	4.11	6.12E−03
13396_Soralis34_01748a	rpmGA	50S ribosomal protein L33 1	Upregulated	2.67	1.90E−02
13396_Soralis34_00180a	rpsS	30S ribosomal protein S19	Upregulated	2.59	1.38E−03
13396_Soralis34_01130a	rplL	50S ribosomal protein L7/L12	Upregulated	2.42	4.55E−02
13396_Soralis34_00682			Upregulated	2.30	2.04E−02
13396_Soralis34_01310	gpmA_3	2,3-Bisphosphoglycerate-dependent phosphoglycerate mutase	Upregulated	2.25	2.78E−02
13396_Soralis34_01404b	trpF	N-(5′-phosphoribosyl)anthranilate isomerase	Downregulated	2.76	1.06E−02
13396_Soralis34_01406b	trpD	Anthranilate phosphoribosyltransferase	Downregulated	2.41	2.24E−04
13396_Soralis34_01408b	trpE	Anthranilate synthase component 1	Downregulated	2.39	3.52E−06
13396_Soralis34_01407	folP	Dihydropteroate synthase	Downregulated	2.38	1.92E−05
13396_Soralis34_01405b	trpC	Indole-3-glycerol phosphate synthase	Downregulated	2.27	9.91E−03
13396_Soralis34_00768	opuBA_1	Choline transport ATP-binding protein OpuBA	Downregulated	2.26	9.84E−03
13396_Soralis34_00766			Downregulated	2.24	2.39E−02
13396_Soralis34_00578			Downregulated	2.24	4.89E−02
13396_Soralis34_01403b	trpB	Tryptophan synthase beta chain	Downregulated	2.24	2.25E−02
13396_Soralis34_01314			Downregulated	2.15	3.81E−02
13396_Soralis34_01402b	trpA	Tryptophan synthase alpha chain	Downregulated	2.14	3.88E−02
13396_Soralis34_00767			Downregulated	2.09	4.86E−02

^aRibosomal proteins that were significantly upregulated in S. oralis in response to coaggregation with S. gordonii.

^bTryptophan metabolism genes that were significantly downregulated in S. oralis in response to coaggregation with S. gordonii.