TABLE 2.
Genomic specialized metabolite potential of B. cepacia complex strain R-12632a
Region | Type | Start (bp) | Stop (bp) | Length (bp) | Most similar known cluster | % similarity |
---|---|---|---|---|---|---|
Replicon 1 | ||||||
Region 1.1 | Lasso peptide | 1308857 | 1331257 | 22,401 | ||
Region 1.2 | NRPS | 1774942 | 1829617 | 54,676 | Ornibactin | 100 |
Region 1.3 | Terpene | 2154310 | 2175359 | 21,050 | ||
Region 1.4 | Aryl polyene | 2295890 | 2340077 | 44,188 | APE Vf | 35 |
Region 1.5 | Aryl polyene | 3101534 | 3142805 | 41,272 | APE Vf | 10 |
Replicon 2 | ||||||
Region 2.1 | Ectoine | 706780 | 717166 | 10,387 | ||
Region 2.2 | Bacteriocin | 747193 | 757916 | 10,724 | ||
Region 2.3 | Terpene | 799797 | 821712 | 21,916 | ||
Region 2.4 | NRPS | 1458507 | 1511289 | 52,783 | Pyochelin | 100 |
Region 2.5 | Terpene | 1685198 | 1704621 | 19,424 | ||
Region 2.6 | HSL | 1865584 | 1886192 | 20,609 | ||
Region 2.7 | Terpene | 2485523 | 2506587 | 21,065 | N-Acyloxyacyl glutamine | 50 |
Region 2.8 | Phosphonate | 2627985 | 2669670 | 41,686 | Phosphinothricintripeptide | 6 |
Replicon 3 | ||||||
Region 3.1 | Terpene | 260819 | 282329 | 21,511 | ||
Region 3.2 | T1PKS | 358243 | 400830 | 42,588 | ||
Region 3.3 | Terpene | 780228 | 801322 | 21,095 | ||
Region 3.4 | Bacteriocin | 873055 | 883870 | 10,816 | ||
Region 3.5 | Other | 1005588 | 1046673 | 41,086 | Pyrrolnitrin | 100 |
Region 3.6 | NRPS-T1PKS hybrid | 1116258 | 1183104 | 66,847 | ||
Region 3.7 | NRPS-T1PKS hybrid | 1237103 | 1316260 | 79,158 | Thaxteramide C | 15 |
The genome of strain R-12632 was analyzed using antiSMASH v5.1.0 (57). Similarity refers to the sequence similarity of the detected gene cluster toward a gene cluster present in the antiSMASH database. NRPS, nonribosomal peptide synthase; HSL, homoserine lactone; T1PKS, type 1 polyketide synthetase.