Table 1.
Core and accessory genome sizes among serovar Cerro, Javiana and Typhimurium isolates (n=16 per serovar).
| Categorya | Number of genesb |
|---|---|
| Core genes | 3,513 |
| Unique core Typhimurium genes | 161 |
| Unique core Javiana genes | 105 |
| Unique core Cerro genes | 59 |
| Genes core to Typhimurium and Javiana, but not Cerro | 103 |
| Genes core to Typhimurium and Cerro, but not Javiana | 59 |
| Genes core to Javiana and Cerro, but not Typhimurium | 16 |
| Number of genes in the pan genome | 8,390 |
a
Core genes represent genes that are present in every isolate for a given comparison.
b
Gene presence/absence across isolates was determined with Roary (Page et al., 2015) and status as a core or accessory gene was determined using Scoary (Brynildsrud et al., 2016).