Table 4.

Common genes under chilling temperatures

Species	Gene ID	(Putative) function	Cold	eLcold	N-cold	N-eLcold
S. lycopersicum
	Solyc02g079370.3.1	Cyclin D 6;3	+	+
	Solyc03g111950.3.1	Cytochrome P450	+	+
	Solyc08g063080.3.1	Putative UDP-sulfo-	+	+
		Quinovose synthase
	Solyc12g009190.2.1	Protein kinase (LRR-III)	+	+
	Solyc12g055920.3.1	Calcineurin B-like protein 4	+	+
	Solyc02g067480.3.1	Unknown function	+	+
	Solyc09g008270.3.1	Unknown function	+	+
S. pennellii
	Sopen03g022310.1	HD-ZIP I/II transcription factor	+	+	+	+
	Sopen04g006840.1	Fumarylacetoacetate (FAA)	+	+	+	+
		hydrolase family
	Sopen08g003230.1	HD-ZIP I/II transcription factor	+	+	+	+
	Sopen09g035000.1	Sucrose-phosphate synthase	+	+	+	+
	Sopen01g044210.1	Unknown function	+	+	+	+
	Sopen02g015400.1	Unknown function	+	+	+	+
	Sopen02g019230.1	Unknown function	+	+	+	+
	Sopen02g026300.1	Unknown function	+	+	+	+
	Sopen03g038840.1	Unknown function	+	+	+	+
	Sopen05g029120.1	Unknown function	+	+	+	+
	Sopen06g017630.1	Unknown function	+	+	+	+
	Sopen06g033440.1	Unknown function	+	+	+	+

Top 40 up-regulated genes were investigated concerning their expression pattern and biological function under stress conditions harboring chilling temperatures