TABLE 6.

Mouse top differentially expressed genes (DEGs) in each category. The table summarizes the top DEGs in brain subcategories in mouse, first ranked by the frequency of DEGs, then by the average FDR value of DEGs across all datasets in that subcategory.

Category	Top 20 DEGs
Early	Plk5, Krt9, Clspn, Gpx6, Penk, Gpr153, Pomc, Tmprss6, Gpd1, Neto2, Rgs4, Cnr1, Ddit4l, Wnt4, Ppp4r4, Adora2a, Aqp1, Traip, Sec14l3, Plekhg5
Intermediate	Penk, Scn4b, Rbfox1, Pde10a, Ttyh1, Ppp1r1b, Gpm6b, Arpp21, Atp2b1, Ypel2, Polr2a, Ptprd, Plp1, Kcnq5, Rgs9, Phactr1, Gsg1l, Pcdh11x, Scaper, Pcp4
Late	Pcp4, Scn4b, Penk, Pde10a, Nrxn3, Atp2b1, Hspa8, Ttr, Phactr1, Ppp3ca, Arpp21, Kcnab1, Spag5, Sec14l1, Arpp19, Nlgn1, Ckb, Kcnq5, Slc4a4, Ablim2
Early_cortical	Serpina1c, Alb, Mup3, Grk4, Gc, Pomc, Fgg, Apob, Gpr153, Serpina1b, Mup20, Ces3a, 2810007J24Rik, Mup10, Gad1, Rerg, Tat, Cyp1a2, Cyp2c50, Serpina1d
Interm-late_cortical	Ddit4l, Gucy2g, Tnnc1, Hapln1, Luzp2, Irf7, Otop2, Gad1, Rgs20, Gfra2, Scube1, Scn4b, Vip, Slc39a10, Glt8d2, Gpr83, Car12, Stard8, Gpr153, Kcna1
Early_striatal	Plk5, Krt9, Clspn, Gpx6, Penk, Tmprss6, Gpd1, Neto2, Rgs4, Cnr1, Ddit4l, Wnt4, Ppp4r4, Adora2a, Aqp1, Traip, Sec14l3, Id4, Slc4a11, Egr2
Interm-late_striatal_MSN	Pde10a, Osbpl8, Pde1b, Gpm6b, Plcb1, Phactr1, Atp2b1, Kcnab1, Kctd1, Homer1, Scn4b, Inf2, Baiap2, Pde7b, Adcy5, Penk, Rbfox1, Rgs9, Ppp4r4, Rhobtb2
Interm-late_striatal_interneuron	Penk, Pde10a, Nlgn1, Osbpl8, Pcdh9, Atad2b, Cttnbp2, Brinp3, Cnr1, Ttr, Pde4b, Galntl6, Clstn2, Ptprs, Kcnip4, Fam155a, Csmd2, Caln1, Snhg11, Erc2
Interm-late_striatal_bulk	Ddit4l, Gpx6, Arpp19, Abi3bp, Scn4b, Ryr1, Gpr83, Rgs4, Cd4, Gpr88, Kcnab1, Pde10a, Pcp4, Clec12a, Rgs9, Adora2a, Adcy5, Chrm4, Krt9, Drd2
Brain	Scn4b, Penk, Kcnab1, Pde10a, Arpp21, Neto2, Pcp4, Sec14l1, Ryr1, Pde7b, Ppp1r1a, Ngef, Arpp19, Rgs9, Cnr1, Rhobtb2, Kcnq5, Pmepa1, Itpka, Ppp1r1b