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. 2021 Oct 8;24(11):103243. doi: 10.1016/j.isci.2021.103243
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

anti-Yap(H-9) Santa Cruz Biotechnology Cat#sc-271134; RRID: AB_10612397
anti-Phospho-YAP (Ser127) Cell Signaling Technology Cat#13008; RRID: AB_2650553
anti-Sox9 (D8G8H) Abcam Cat#ab185966; RRID: AB_2728660
anti-Ki-67(D3B5) Cell Signaling Technology Cat#12075; RRID: AB_2728830
anti-Kim-1 Abcam Cat#ab47635; RRID: AB_882998
anti-α-SMA BOSTER Cat#BM0002; RRID: AB_2811044
anti-CD31 BD Biosciences Pharmingen Cat#550274; RRID: AB_393571
anti-Areg Abcam Cat#ab180722
anti-Survivin(D-8) Santa Cruz Cat#sc-17779; RRID: AB_628302
anti-Phospho-LATS1 (Thr1079) Cell Signaling Technology Cat#8654; RRID: AB_10971635
anti-COL IV Abcam Cat#ab19808; RRID: AB_445160
anti-β-tubulin Proteintech Group Cat#10068-1-AP; RRID: AB_2303998

Chemicals, peptides, and recombinant proteins

PGE2 Santa Cruz Cat#sc-201225
Collagen I, Rat Tail Corning Cat#354236
4-hydrazinobenzoic acid Molbase Cat#SJ000FFC61940
Polyethylenimine Polysciences, Inc Cat#19850
EDC (1-ethyl-3-[3-dimethylaminopropyl]carbodiimide hydrochloride) Thermo Scientific Cat#22980
sulfo-NHS(N-hydroxysulfosuccinimide) Thermo Scientific Cat#24510
TRIzol reagent Invitrogen Cat#15596018
RIPA lysis buffer Solarbio Cat#R0010
Hieff® qPCR SYBR® Green Master Mix (No Rox) Yeasen Cat#11201ES08
FITC-labeled LTL Vector Laboratories Cat# FL-1321-2
DAPI Beyotime Biotechnology Cat#C1002
2-(N-morpholino) ethanesulfonic acid Sangon Biotech Cat#145224

Biological samples

primary renal tubular epithelial cells This Paper N/A
Transgenic mice for C57BL/6 Rosa26mTmG transgenic mice Jackson Laboratory Cat#007676
C57BL/6 Sox9-CreERT2 transgenic mice Jackson Laboratory Cat#018829
C57BL/6 mice Laboratory Animal Center of the Academy of Military Medical Science N/A

Critical commercial assays

PGE2 Enzyme Immunoassay Kit ArborAssays Cat#K051-H1
Urea Assay Kit Nanjing Jiancheng Bioengineering Institute Cat#C013-1
Creatinine Assay Kit Nanjing Jiancheng Bioengineering Institute Cat#C011-1
Cell Counting Kit-8 Beyotime Biotechnology Cat#C0038
Reverse transcriptase core kit Takara Cat#RR037A
Hoechst Staining Kit Beyotime Biotechnology Cat#C0003

Oligonucleotides

Bad 5′-AAGTCCGATCCCGGAATCC-3′ This paper N/A
Bad 5′-GCTCACTCGGCTCAAACTCT-3′ This paper N/A
Bax 5′-TGAAGACAGGGGCCTTTTTG-3′ This paper N/A
Bax 5′-AATTCGCCGGAGACACTCG-3′ This paper N/A
Caspase3 5′-TGGTGATGAAGGGGTC
ATTTATG-3′
This paper N/A
Caspase3 5′-TTCGGCTTTCCAGTCAGA
CTC-3′
This paper N/A
Fas 5′-TATCAAGGAGGCCCATTTTGC-3′ This paper N/A
Fas 5′-TGTTTCCACTTCTAAACCATGCT-3′ This paper N/A
Gapdh 5′-AGGTCGGTGTGAACGGATTTG-3′ This paper N/A
Gapdh 5′-TGTAGACCATGTAGTTGAGG
TCA-3′
This paper N/A
Nonspecific shRNA (sh Ctrl) 5′-CCGG-CA
ACAAGATGAAGAGCACCAA-CTCGAG-
TTGGTGCTCTTCATCTTGTTG-TTTTTG-3′
Sigma-Aldrich Cat#SHC002
shRNA-Yap (sh Yap) 5′-CCGG-GCAGAC
AGATTCCTTTGTTAA-CTCGAG-TTAAC
AAAGGAATCTGTCTGC-TTTTTG-3′
Broad Institute TRCN0000095864

Software and algorithms

Two-photon microscope system Olympus FV1000
Scanning electron microscopy (SEM) HITACHI X-650
FT-IR spectromete Bio-Rad FTS-6000
Parallel-plate rheometer New Castle N/A
Imaris Oxinst https://imaris.oxinst.com/
Prism 8 GraphPad https://www.graphpad.com/scientific-software/prism/
ImageJ ImageJ https://imagej.nih.gov/ij