Table 2.
Four SNPs associated with electrical conductivity (EC), germination rate (GR), shoot length (ShL), and root length (RL) on MLM and mrMLM models
| Traits a | SNP IDb | Chrc | Position (bp) | Allele | MLMd | mrMLMf | ||
|---|---|---|---|---|---|---|---|---|
| −log10 (p) | R2 (%)e | LODg | R2 (%)e | |||||
| EC | Gm_08_11971416 | 8 | 11,971,416 | C/T | 5.16–5.25 | 8.80–8.99 | 7.99–9.25 | 7.78–9.20 |
| Gm_08_46239716 | 8 | 46,239,716 | A/G | 3.98–4.08 | 6.48–6.66 | 3.78–5.53 | 4.88–7.26 | |
| GR | Gm_08_11971416 | 8 | 11,971,416 | C/T | 4.82–5.08 | 8.29–8.84 | 4.93–5.84 | 5.19–6.89 |
| Gm_08_46239716 | 8 | 46,239,716 | A/G | 4.88–5.79 | 8.26–10.12 | 7.14–7.24 | 9.54–12.13 | |
| ShL | Gm_05_1000479 | 5 | 1,000,479 | A/C | 3.73–4.31 | 6.08–6.87 | 7.38 | 9.92 |
| RL | Gm_01_53535790 | 1 | 53,535,790 | A/G | 3.78–3.88 | 6.09–6.28 | 3.69 | 6.07 |
aEC Electrical conductivity (μS·cm−1/g−1), GR Germination rate, ShL Shoot length (cm), RL Root length (cm)
bSingle nucleotide polymorphism
cChromosome
dMixed Linear Model
ePhenotypic variation explained (%)
fmulti-locus random-SNP-effect mixed linear model (mrMLM)
glogarithm of odds