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. 2021 Oct 29;22:301. doi: 10.1186/s13059-021-02519-4

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 3 — Open science in scRNA-seq tools development. A GitHub summary statistics for scRNA-seq tool repositories. B Stacked bar plot showing the proportion of publications with and without an associated preprint. C Scatter plot showing preprint date against the number of days until publication, colors indicate the number of citations (log scale). Box plot and density on the right show the distribution of time delay in publication. D Coefficients for log-linear models predicting citations and Altmetric Attention Score (AAS) for publications. Years since publication are modeled as a cubic spline with three degrees of freedom. Error bars show a 95% confidence interval. The inlaid bar chart shows the adjusted R²for each model. E Coefficients for log-linear models predicting total citations, total AAS, and GitHub stars for tools. Error bars show a 95% confidence interval. The inlaid bar chart shows the adjusted R²for each model