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. 2021 Aug 12;38(11):5134–5143. doi: 10.1093/molbev/msab240

Table 1.

SH3 and OB Domains within Proteins of the Translation System.

Protein Name PDB Code: Chain UniProt Accession ECOD H-Group Name Fold Residues Residues of the Common Corea
uL2 1VY4: BD P60405 Nucleic acid-binding proteins (2.1.1.378) 73–120 74–85, 92–110, [111–119]
uL2 1VY4: BD P60405 SH3 (4.1.1.447) 126–197 [136–143], 161–169, 172–189
uL24 1VY4: BY Q5SHP9 SH3 (4.1.1.786) 1–107 [7–16], 23–40, 64–71
uS12 1VY4: AL Q5SHN3 Nucleic acid-binding proteins (2.1.1.370) 28–100 32–40, 54–69, [77–84]
uS17 1VY4: AQ P0DOY7 Nucleic acid-binding proteins (2.1.1.51) 2–78 6–24, 39–46, [51–59]
bL19 1VY4: BT P60490 SH3 (4.1.1.57) 1–131 [22–31], 44–53, 59–78
bS1 6H4N: y P0AG67 Nucleic acid-binding proteins (2.1.1.570) 276–348 280–307, [321–332]
aL14 4V6U: B5 Q8U2L5 SH3 (4.1.1.776) 3–61 [4–12], 20–38, 44–50
aL21 4V6U: BR Q8U217 SH3 (4.1.1.59) 31–97 [35–44], 60–92
aS4 4V6U: AE Q8U011 Nucleic acid-binding proteins (2.1.1.45) 121–179 122–150, [158–167]
aS4 4V6U: AE Q8U011 SH3 (4.1.1.449) 178–236 [179–188], 194–204, 212–230
aS28 4V6U: AX Q8U159 Nucleic acid-binding proteins (2.1.1.20) 1–71 6–17, 25–45, [49–58]
bIF1 5LMV: W Q5SHR1 Nucleic acid-binding proteins (2.1.1.21) 1–72 9–37, [48–57]
EF-P 1UEB: A Q76G20 SH3 (4.1.1.27) 1–63 [7–15], 17–26, 37–54
EF-P 1UEB: A Q76G20 Nucleic acid-binding proteins (2.1.1.19) 64–126 64–98, [103–115]
EF-P 1UEB: A Q76G20 Nucleic acid-binding proteins (2.1.1.22) 127–184 127–136, 149–161, [165–173]
aIF1 4MNO: A Q9V138 Nucleic acid-binding proteins (2.1.1.20) 25–90 25–54, [63–72]
aIF2A 1YZ6: A Q9V0E4 Nucleic acid-binding proteins (2.1.1.80) 9–83 13–45, [57–66]
aIF5A 1IZ6: A O50089 e1iz6A2 (4.1.1.111) 2–70 11–20, 23–32, [43–59]
aIF5A 1IZ6: A O50089 Nucleic acid-binding proteins (2.1.1.21) 71–135 73–104, [113–122]
a

The residues of the Lβ element are given in brackets.