. 2021 Sep 22;9(2):e00044-21. doi: 10.1128/Spectrum.00044-21

TABLE 1.

sRNA candidates in B. pertussis

Name^a	Rank^b	ANNOgesic ID^b	Neighboring genes^c		Direction^d	Expression mode^e
			Neighboring genes^c			ANNOgesic^b	Northern blot^f
			5’ ORF	3’ ORF		ANNOgesic^b	Northern blot^f
S1	4	212	<BP2496	BP2497>	<	Bvg(−)	Bvg(−)/Bvg(+)
S2	5	128	BP1548>	dnaX>	>	Bvg(−)	Independent
S3	6	188	<ndk	valS>	<	Independent	Independent
S4	7	296	BP3391>	<BP3392	>	Independent	Independent
S5	8	16	<phoB	ubiE>	<	Bvg(+)
S6	104	294	<BP3385	<BP3386	<	Bvg(−)
S7	11	168	<BP1907	cysS >	>	Independent
S8	16	123	<BP1496	thrS>	>	Independent	Bvg(+)
S9	17	45	BP0470>	ribB>	>	Bvg(+)	Bvg(+)
S10	25	298	<BP3409	<BP3410	<	Bvg(+)	Bvg(+)
S11	26	242	<BP2886	BP2887>	>	Bvg(+)	Bvg(+)
S12	28	17	ubiE>	BP0162>	>	Independent	Bvg(−)/Bvg(+)
S13	30	239	panB>	BP2851>	<	Bvg(−)
S14	34	95	BP1164>	BP1165>	>	Independent
S15	86	288	BP3352>	BP3353>	<	Independent
S16	52	42	<BP0405	<tRNA Val	<	Bvg(+)
S17	9	276	<BP3151	<BP3152	<	Bvg(+)	Bvg(+)
S18			*<BP2735*	*BP2736>*	<		Bvg(−)
S19			<dnaA	rpmH>	>
S20			<BP0920	<citB	>		Independent

Names in bold were confirmed by Northern blot analyses.

ANNOgesic rank, ID, and expression mode (see Table S1). S18, S19, and S20 were not identified by ANNOgesic so this information is not available for them.

Neighboring genes of the sRNA; > corresponds to top strand gene; < corresponds to bottom strand gene.

Directionality of the sRNA transcription; >, top strand; <, bottom strand.

Expression mode of sRNA in RNA-seq or Northern blot analyses. Bvg(+), observed in the presence of BvgA∼P; Bvg(−), observed in the absence of BvgA∼P; (−), not detected; CONST, similar levels in BvgA(+) and BvgA(−).

Northerns were performed for sRNAs in bold.