TABLE 3.

Differentially expressed cro-mir’s, their lengths, and their loci of origin^a

milRNA identifier	Sequence (5′–3′)	Length (nt)	Log2FC				Origin
			RNA-seq		Stem-loop RT-qPCR
			Δdcl2 (Bc)	Δdcl2 (Fg)	Δdcl2 (Bc)	Δdcl2 (Fg)
cro-mir-1	TAGAATTCGGGGTAGAAT	18	−7.90	−7.15	−8.22	−9.43	Intergenic
cro-mir-2	TAGAATTCGGGGTAGAATG	19	−8.70	−8.23	−3.33	−10.94	Intergenic
cro-mir-3	TTAGCCTCGAGACTTTGCA	19	−8.28	−7.23	−5.85	−2.16	3′ UTR
cro-mir-4	TCAGCCTCGAGACTTTGCC	19	−8.47	−6.25	−2.18	−2.92	3′ UTR
cro-mir-5	TTGCAATGATTTGCATTTCGC	21	−3.52	−2.61	−3.54	−1.31	Intergenic
cro-mir-6	TAGGACTCGAGTAGTTATAAC	21	−4.39	−4.70	−2.05	−1.75	Intergenic
cro-mir-9	TCGGACGTATATTGACTACTC	21	−3.88	−3.22	−2.87	−2.71	Promoter
cro-mir-10	TCGGTGGGATGTTTGAGACT	20	−3.80	−2.59	−3.43	−3.21	Promoter
cro-mir-11	TAGAGTTTTTGGAGATGCT	19	−5.22	−4.68	−5.31	−3.05	Promoter
cro-mir-13	TTCTTCCTTGATGCGTCCC	19	−7.92	−7.74	−5.64	−6.07	3′ UTR
cro-mir-23	CTGGCAGGTATGGTCGTAGATG	22	+2.68	+2.18	−2.09	−3.10	Intergenic
cro-mir-36	TCAAACACAATTAGCGGTC	19	−7.30	−6.21	−4.26	−3.50	Intergenic

^ant, nucleotides; UTR, untranslated region; Bc, B. cinerea; Fc, F. graminearum.