Table 2.

Summary of repeat proportion in the horsegram genome.

Class	Super family	Count	Coverage (bp)	Masked (%)
LTR	Copia	22,415	14,648,777	5.35
	Gypsy	18,855	15,255,927	5.57
	Unknown	14,539	6,539,966	2.39
LINE	LINE	1,429	705,197	0.26
Sub-total (class I)		57,238	37,149,867	13.57
DNA	DTA	4,316	1,349,900	0.49
	DTC	27,281	7,704,524	2.82
	DTH	366	172,226	0.06
	DTM	15,875	8,660,753	3.17
	DTT	528	155,776	0.06
	Helitron	7,699	2,008,476	0.73
	Unknown	33,472	10,654,223	3.89
MITE	DTA	738	140,381	0.05
	DTC	113	21,000	0.01
	DTH	96	22,381	0.01
	DTM	1,041	156,337	0.06
	DTT	35	7,790	0.00
Sub-total (class II)		91,560	31,053,767	11.35
Total interspersed repeats		148,798	68,203,634	24.91
Others	Low complexity	78	44,478	0.02
	Satellite	3	159	0.00
	Simple repeat	43	5,515	0.00
	rRNA	311	314,595	0.11
	Total	149,233	68,568,381	25.04