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. 2021 Oct 18;12:753960. doi: 10.3389/fimmu.2021.753960

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Copyright © 2021 Edholm, Fenton, Mondot, Paulssen, Lefranc, Boudinot and Magadan

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Evolutionary tree of TRAV protein sequences from Atlantic salmon and rainbow trout. The tree was inferred using the Maximum Likelyhood method and JTT matrix based model. A boostrap of 500 replicates was used. The tree with highest likelihood is shown, and is drawn to scale, with branch lengths representing the number of substitutions per site. The percentage of trees in which the associated taxa cluster together is indicated when >80. Subgroups have been collapsed for the sake of readability. The number of Atlantic salmon and rainbow trout sequences in each subgroup is indicated between brackets (an extended tree is represented in Supplementary Figure 4 ). The analysis has been performed only on functional V sequences. Hence it comprises only 25 subgroups since subgroup 26 is only represented by an ORF sequence in the Arlee rainbow trout genome.