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. 2021 Nov;31(11):2107–2119. doi: 10.1101/gr.273631.120

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© 2021 Liu et al.; Published by Cold Spring Harbor Laboratory Press

This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see https://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

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Figure 8. — Comparison of VICAR local genealogy inference with RAxML trees. RAxML was run on nonoverlapping sliding windows each of 1000 sites. The upper panel shows the topology of the local genealogy at each site inferred by VICAR. The lower panel shows the topology inferred by RAxML at each window. Coloring corresponds to different topologies: red corresponds to ((H. cydno, H. timareta), H. numata), which is also the topology of the species tree; blue, ((H. cydno, H. numata), H. timareta); and green, ((H. numata, H. timareta), H. cydno).