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. 2021 Nov;31(11):2107–2119. doi: 10.1101/gr.273631.120

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© 2021 Liu et al.; Published by Cold Spring Harbor Laboratory Press

This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see https://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

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Figure 9. — The coalHMM model. (A) The four states of a standard coalHMM that corresponds to the species tree Ψ. (B) The six states of a refined coalHMM that corresponds to the species tree Ψ when its internal branch is broken into three sub-branches.