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. 2021 Jun 18;29(11):1611–1624. doi: 10.1038/s41431-021-00917-7

Fig. 2. Imputation quality (1KGPp3v5) of HapMap samples for six different arrays, stratified by minor allele frequency.

Fig. 2

A describes the imputation quality for the ultra-rare variants (MAF<0.5%), B describes the imputation quality for the rare variant bin (MAF 0.5–1%. C describes the imputation quality for the low-frequency variants (MAF 1–5%) and D describes the imputation quality for common variants (MAF >5%). All bins are coloured by high (green), medium (yellow) or low (red) imputation quality R2, >0.8, 0.3–0.8 and <0.3 respectively.