Antibodies |
|
Anti-human IgE antibody, biotinylated |
Southern Biotech |
Cat#9160-08; RRID: AB_2796671
|
Anti-human IgG antibody, biotinylated |
Southern Biotech |
Cat#9042-08; RRID: AB_2796608
|
|
Biological samples |
|
OIT allergic sera |
MacGinnitie et al.17
|
Clinical trial NCT01781637, https://www.clinicaltrials.gov
|
|
Critical commercial assays |
|
Human IgE ELISA kit |
Bethyl |
Cat#E80-108 |
|
Deposited data |
|
Z-score data |
This paper |
Mendeley Data: https://doi.org/10.17632/zp97585dkp.1
|
|
Oligonucleotides |
|
T7-PFA aatgatacggcggGAATTCCGCTGCGT |
Xu et al.16
|
N/A |
T7-PRA caagcagaagACTCGAGCTCTTCCCTG |
Xu et al.16
|
N/A |
|
Recombinant DNA |
|
Peanut saturation mutagenesis AllerScan library |
This paper |
Annotations are available in Table S1 and are deposited at Mendeley Data: https://doi.org/10.17632/zp97585dkp.1
|
T7FNS2 vector |
Larman et al.15
|
N/A |
|
Software and algorithms |
|
Bowtie |
Langmead et al.37
|
http://bowtie-bio.sourceforge.net/index.shtml |
Cutadapt |
Martin38
|
https://cutadapt.readthedocs.io/en/stable/ |
R, version 3.6.1 |
|
N/A |
GraphPad Prism version 9.1.2 |
|
N/A |
Samtools version 1.3.1 |
Li et al.39
|
http://www.htslib.org |
tidyverse |
Wickham et al.40
|
CRAN: tidyverse; RRID: SCR_019186
|
|
Other |
|
Pierce Streptavidin Magnetic Beads |
Thermo Fisher Scientific |
Cat#88817 |
T7 Select Packaging Kit |
EMD Milipore |
Cat#70014-3 |