TABLE 1.
Proportion of 5-methylcytosine in different sequence contexts for S1
| Sequence context | % of methylated cytosinesa
|
||
|---|---|---|---|
| S1-5′FL | S1 | S1-3′FL | |
| CpG | 97 (93/96) | 92 (611/667) | 72 (23/32) |
| CpNpG | 14 (4/19) | 55 (366/671) | 0 (0/6) |
| Cp(A/T)pA | 18 (25/137) | 41 (157/382) | 11 (10/93) |
| Other | 3 (4/119) | 20 (252/1,261) | 16 (12/74) |
a
The number of methylated cytosines relative to the total number of cytosines analyzed for each context is presented in parentheses. S1-5′FL and S1-3′FL represent the 5′ and 3′ S1 genomic flanking regions. Only loci with DNA methylation in flanking regions were included (na30 and na32 for S1-5′FL and na7 and na17 for S1-3′FL).