Table 1.
Whole Genome Sequencing analysis of the Lm isolates: for each strain serogroup, clonal complex, accession number, presence/absence of virulence genes, resistance determinants and intact pro-phage are reported.
| Lm_2510 | Lm_2541 | ||
|---|---|---|---|
| Accession number | JAHAUX000000000 | JAHAUW000000000 | |
| Typing | Serogroup | IV b | IV b |
| Clonal Complex (CC) | CC1 | CC4 | |
| Virulence genes | LIPI-1 | + | + |
| LIPI-2 | – | – | |
| LIPI-3 | + | + | |
| LIPI-4 | – | + | |
| Internalin genes | inlA; inlB; inlC; inlE; inlF; inlH; inlJ; inlK | inlA; inlB; inlC; inlE; inlF; inlH; inlJ; | |
| agrA | + | + | |
| agrC | + | + | |
| ami | – | – | |
| aut | – | – | |
| bsh | + | + | |
| cheA | + | + | |
| cheY | + | + | |
| cwhA | + | + | |
| dltA | + | + | |
| fbpA | + | + | |
| fur | + | + | |
| gtcA | + | + | |
| hpt | + | + | |
| lap | + | + | |
| lapB | + | + | |
| lgt | + | + | |
| lisK | + | + | |
| lisR | + | + | |
| lntA | + | + | |
| lpeA | + | + | |
| lplA1 | + | + | |
| lspA | + | + | |
| oatA | + | + | |
| oppA | + | + | |
| pdgA | + | + | |
| prsA2 | + | + | |
| purQ | + | + | |
| srtA | + | + | |
| srtB | + | + | |
| stp | + | + | |
| svpA | + | + | |
| tagB | – | – | |
| vip | + | + | |
| virR | + | + | |
| virS | + | + | |
| aut_IVb | + | + | |
| comK | + | + | |
| gltA | + | + | |
| gltB | + | + | |
| lmo1280 | + | + | |
| lmo2470 | + | + | |
| lmo2491 | + | + | |
| mdrM | + | + | |
| Resistance determinants | Antimicrobial resistance genes | fosX; lin; norB; sul; tetA_2; tetA_3; tetC | fosX; lin; norB; sul; tetA_2; tetA_3; tetC |
| Multidrug Efflux pumps | mdrl; lde; SugE | mdrl; lde; SugE | |
| Intact pro-phage | PHAGE_Lister_LP_030_3 (NC_024384.1) | – | |