Table 1.
The Number of gene variations in SARS-CoV2 genomes in the second wave of infection via comparison of the 183 whole genomes to the NC_045512.2 genome sequence the.
| Genome segment | Missense mutation | Synonymous mutation | Frameshift deletion/in frame del | Other mutation | |||
|---|---|---|---|---|---|---|---|
| Upstream | downstream | Stop gained | |||||
| ORF1ab | 344 | 306 | 8 | 14 | 0 | 2 | 674 |
| S | 94 | 57 | 0 | 0 | 25 | 1 | 177 |
| E | 8 | 4 | 1 | 2 | 0 | 0 | 15 |
| M | 9 | 13 | 0 | 1 | 0 | 0 | 23 |
| N (87) | 57 | 26 | 1 | 3 | 0 | 0 | 87 |
| ORF8 | 20 | 4 | 3 | 2 | 0 | 3 | 32 |
| ORF10 | 5 | 1 | 2 | 0 | 0 | 0 | 8 |
| ORF 3a | 48 | 15 | 0 | 0 | 0 | 0 | 63 |
| ORF6 | 3 | 2 | 0 | 0 | 0 | 1 | 6 |
| ORF7a | 16 | 3 | 0 | 1 | 0 | 0 | 20 |
| ORF7b | 9 | 0 | 0 | 0 | 0 | 1 | 10 |
| Total | 613 | 431 | 15 | 23 | 25 | 8 | 1115 |
E: envelope protein; M: membrane glycoprotein; N: Nucleocapsid phosphoprotein; ORF: open reading frame; S: spike glycoprotein; SARS-CoV-2: severe acute respiratory syndrome coronavirus 2.