|
Experimental Models
|
| C57BL/6J (M. musculus) |
Jackson Lab |
B6.129P2Gpr37tm1Dgen/J |
| Nrl.gfp (M. musculus) |
Kind gift of Dr Anand Swaroop, now available through Jackson Lab |
B6. Cg‐Tg(Nrl‐EGFP)1Asw/J |
| Ai9(RCL‐tdT) or TdTomato (M. musculus) |
Jackson Lab |
B6. Cg‐Gt(ROSA)26Sortm9(CAG‐tdTomato)Hze/J |
| mTmG or myrRFP (M. musculus) |
Jackson Lab |
Gt(ROSA)26Sortm4(ACTB‐tdTomato,‐EGFP)Luo/J |
| Gnat1−/− (M. musculus) |
kind gift of Dr Janis Lem, Tufts Medical College |
Gnat1−/−; Gnat1KO |
| Nrl.Cre (M. musculus) |
Jackson Lab |
C57BL/6J‐Tg(Nrl‐cre)1Smgc/J |
|
Recombinant DNA
|
| Pd10.Nrl.Cre |
This paper, based on Akimoto et al, 2006 and Brightman et al, 2016 sequences |
N/A |
| AAVPk |
Addgene |
N/A |
| pHGTI helper |
Plasmid factory |
PF1810 |
| pLenti‐CAG‐GFP‐P2A |
Generated by Dr Ortín‐Martínez Arturo and Professor Valerie Wallace, University of Toronto |
N/A |
| pLenti‐CAG‐RhoA‐GFP‐P2A |
Generated by Dr Ortín‐Martínez Arturo and Professor Valerie Wallace, University of Toronto |
N/A |
| pLenti‐CAG‐ΔNRac‐GFP‐P2A |
Generated by Dr Ortín‐Martínez Arturo and Professor Valerie Wallace, University of Toronto |
N/A |
| pMD2.G |
Addgene |
N/A |
| pCMVΔR8.74 |
Addgene |
N/A |
|
Antibodies
|
| CD81 |
Cell Signalling |
10037 |
| TSG101 |
BD Transd |
612696 |
| CD9 |
EDM Millipore |
CBL162 |
| Alix |
Cell Signalling |
2171 |
| Cre recomb |
EDM Millipore |
MAB3120 |
| GM130 |
Cell Signalling |
12480 |
| Opsin |
Sigma |
O4886 |
| G‐alpha‐t1 |
Santa Cruz INC |
Sc389 |
| Recoverin |
MERCK |
AB5585 |
| GFP/CFP/RFP |
Clontech |
632380 |
| Anti‐LAMP1 |
Abcam |
[1D4B] (ab25245) |
| Beta actin |
R&D Systems |
MAB8929 |
| Beta actin |
Sigma |
A2228 |
| Rac |
Cytoskeleton Inc |
ARC03‐S |
| RhoA |
Cell Signaling |
(67B9) Rabbit mAb #2117 |
| CD73 APC |
Miltenyl |
130‐103‐052 |
|
Oligonucleotides and sequence‐based reagents
|
|
rtQPCR primers |
This study |
Expanded View‐ Materials and Methods |
| Gfp: GAAGCGCGATGACATGGT/CCATGCCGAGAGTGATCC/ probe 67 |
This study |
Expanded View‐ Materials and Methods |
| Cre: ATCTGGCATTTCTGGGGATTG/ GCAACACCATTTTTTCTGACCC/ probe 20 |
This study |
Expanded View‐ Materials and Methods |
| Gnat1: AGAGCTGGAGAAGAAGCTGAAA/ TAGTGCTCTTCCCGGATTCA/ probe 89 |
This study |
Expanded View‐ Materials and Methods |
| Rcvrn: CAATGGGACCATCAGCAAA/ CCTCAGGCTTGATCATTTTGA/ probe 67 |
This study |
Expanded View‐ Materials and Methods |
| Rho: ACCTGGATCATGGCGTT/ TGCCCTCAGGGATGTACC/probe 32 |
This study |
Expanded View‐ Materials and Methods |
| Crx: CCCCAATGTGGACCTGAT/GGCTCCTGGTGAATGTGGT/ probe 64 |
This study |
Expanded View‐ Materials and Methods |
| Nrl; TTCTGGTTCTGACAGTGACTACG/ TGGGACTGAGCAGAGAGAGG/ probe 53 |
This study |
Expanded View‐ Materials and Methods |
| Actb:AAGGCCAACCGTGAAAAGAT/GTGGTACGACCAGAGGCATAC/probe 56 |
This study |
Expanded View‐ Materials and Methods |
|
Chemicals, enzymes and other reagents
|
| RNase |
Sigma |
|
| Super RNAse Out 20 U/µl, |
Thermo Fisher |
|
| TaqMan® Universal PCR Master Mix |
Roche UK |
|
| FAM RTQPCR probe |
Universal Probe Library; Roche, Germany |
|
| Mitotracker‐Orange |
(Invitrogen/Molecular Probes, M7512) |
|
| SiR‐actin |
Cytoskeleton |
|
| SiR‐tubulin |
Cytoskeleton |
|
| SiR700‐lysosome |
Cytoskeleton |
|
| verapamil |
Cytoskeleton |
|
| DiI or DiO lipophilic tracers |
Thermo Fisher |
|
| Cytochalasin D |
Sigma |
|
| ROCK inhibitor Y‐27632 |
Sigma |
|
| Latrunculin B |
Sigma |
|
| Fibronectin |
Sigma |
|
| Poly‐D‐lysine hydrobromide |
Sigma |
|
|
Software
|
| GraphPad Prism 8 |
GraphPad |
|
| Adobe Photoshop version 22.4 |
Adobe |
|
| Image J (FIJI) |
NIH |
|
| HyVolution software (Scientific Volume Imaging Huygens) |
Scientific Volume Imaging |
|
| LEICA LASX |
Leica |
|
| Chemidoc‐Gel Lab |
Bio‐Rad |
|
| Fast Real‐time Sequence Detection System (Applied Bioscience, USA) |
Applied Bioscience |
|
|
Other
|
| QuantiTect® Whole Transcriptome |
Qiagen |
|
| Qiagen RNeasy® Mini kit |
Qiagen |
|
| Immobilon™ Western Chemiluminescent HRP substrate kit |
Millipore, USA |
|
| CD73 APC and anti APC microbeads and magnetic rack |
Miltenyl |
|
| Worthington Papain Dissociation System |
Worthington Biochemical Corporation, USA |
|