Experimental Models
|
C57BL/6J (M. musculus) |
Jackson Lab |
B6.129P2Gpr37tm1Dgen/J |
Nrl.gfp (M. musculus) |
Kind gift of Dr Anand Swaroop, now available through Jackson Lab |
B6. Cg‐Tg(Nrl‐EGFP)1Asw/J |
Ai9(RCL‐tdT) or TdTomato (M. musculus) |
Jackson Lab |
B6. Cg‐Gt(ROSA)26Sortm9(CAG‐tdTomato)Hze/J |
mTmG or myrRFP (M. musculus) |
Jackson Lab |
Gt(ROSA)26Sortm4(ACTB‐tdTomato,‐EGFP)Luo/J |
Gnat1−/− (M. musculus) |
kind gift of Dr Janis Lem, Tufts Medical College |
Gnat1−/−; Gnat1KO |
Nrl.Cre (M. musculus) |
Jackson Lab |
C57BL/6J‐Tg(Nrl‐cre)1Smgc/J |
Recombinant DNA
|
Pd10.Nrl.Cre |
This paper, based on Akimoto et al, 2006 and Brightman et al, 2016 sequences |
N/A |
AAVPk |
Addgene |
N/A |
pHGTI helper |
Plasmid factory |
PF1810 |
pLenti‐CAG‐GFP‐P2A |
Generated by Dr Ortín‐Martínez Arturo and Professor Valerie Wallace, University of Toronto |
N/A |
pLenti‐CAG‐RhoA‐GFP‐P2A |
Generated by Dr Ortín‐Martínez Arturo and Professor Valerie Wallace, University of Toronto |
N/A |
pLenti‐CAG‐ΔNRac‐GFP‐P2A |
Generated by Dr Ortín‐Martínez Arturo and Professor Valerie Wallace, University of Toronto |
N/A |
pMD2.G |
Addgene |
N/A |
pCMVΔR8.74 |
Addgene |
N/A |
Antibodies
|
CD81 |
Cell Signalling |
10037 |
TSG101 |
BD Transd |
612696 |
CD9 |
EDM Millipore |
CBL162 |
Alix |
Cell Signalling |
2171 |
Cre recomb |
EDM Millipore |
MAB3120 |
GM130 |
Cell Signalling |
12480 |
Opsin |
Sigma |
O4886 |
G‐alpha‐t1 |
Santa Cruz INC |
Sc389 |
Recoverin |
MERCK |
AB5585 |
GFP/CFP/RFP |
Clontech |
632380 |
Anti‐LAMP1 |
Abcam |
[1D4B] (ab25245) |
Beta actin |
R&D Systems |
MAB8929 |
Beta actin |
Sigma |
A2228 |
Rac |
Cytoskeleton Inc |
ARC03‐S |
RhoA |
Cell Signaling |
(67B9) Rabbit mAb #2117 |
CD73 APC |
Miltenyl |
130‐103‐052 |
Oligonucleotides and sequence‐based reagents
|
rtQPCR primers |
This study |
Expanded View‐ Materials and Methods |
Gfp: GAAGCGCGATGACATGGT/CCATGCCGAGAGTGATCC/ probe 67 |
This study |
Expanded View‐ Materials and Methods |
Cre: ATCTGGCATTTCTGGGGATTG/ GCAACACCATTTTTTCTGACCC/ probe 20 |
This study |
Expanded View‐ Materials and Methods |
Gnat1: AGAGCTGGAGAAGAAGCTGAAA/ TAGTGCTCTTCCCGGATTCA/ probe 89 |
This study |
Expanded View‐ Materials and Methods |
Rcvrn: CAATGGGACCATCAGCAAA/ CCTCAGGCTTGATCATTTTGA/ probe 67 |
This study |
Expanded View‐ Materials and Methods |
Rho: ACCTGGATCATGGCGTT/ TGCCCTCAGGGATGTACC/probe 32 |
This study |
Expanded View‐ Materials and Methods |
Crx: CCCCAATGTGGACCTGAT/GGCTCCTGGTGAATGTGGT/ probe 64 |
This study |
Expanded View‐ Materials and Methods |
Nrl; TTCTGGTTCTGACAGTGACTACG/ TGGGACTGAGCAGAGAGAGG/ probe 53 |
This study |
Expanded View‐ Materials and Methods |
Actb:AAGGCCAACCGTGAAAAGAT/GTGGTACGACCAGAGGCATAC/probe 56 |
This study |
Expanded View‐ Materials and Methods |
Chemicals, enzymes and other reagents
|
RNase |
Sigma |
|
Super RNAse Out 20 U/µl, |
Thermo Fisher |
|
TaqMan® Universal PCR Master Mix |
Roche UK |
|
FAM RTQPCR probe |
Universal Probe Library; Roche, Germany |
|
Mitotracker‐Orange |
(Invitrogen/Molecular Probes, M7512) |
|
SiR‐actin |
Cytoskeleton |
|
SiR‐tubulin |
Cytoskeleton |
|
SiR700‐lysosome |
Cytoskeleton |
|
verapamil |
Cytoskeleton |
|
DiI or DiO lipophilic tracers |
Thermo Fisher |
|
Cytochalasin D |
Sigma |
|
ROCK inhibitor Y‐27632 |
Sigma |
|
Latrunculin B |
Sigma |
|
Fibronectin |
Sigma |
|
Poly‐D‐lysine hydrobromide |
Sigma |
|
Software
|
GraphPad Prism 8 |
GraphPad |
|
Adobe Photoshop version 22.4 |
Adobe |
|
Image J (FIJI) |
NIH |
|
HyVolution software (Scientific Volume Imaging Huygens) |
Scientific Volume Imaging |
|
LEICA LASX |
Leica |
|
Chemidoc‐Gel Lab |
Bio‐Rad |
|
Fast Real‐time Sequence Detection System (Applied Bioscience, USA) |
Applied Bioscience |
|
Other
|
QuantiTect® Whole Transcriptome |
Qiagen |
|
Qiagen RNeasy® Mini kit |
Qiagen |
|
Immobilon™ Western Chemiluminescent HRP substrate kit |
Millipore, USA |
|
CD73 APC and anti APC microbeads and magnetic rack |
Miltenyl |
|
Worthington Papain Dissociation System |
Worthington Biochemical Corporation, USA |
|