Skip to main content
. Author manuscript; available in PMC: 2021 Nov 4.
Published in final edited form as: Nat Biotechnol. 2020 Nov 30;39(4):431–441. doi: 10.1038/s41587-020-0731-9

Extended Data Figure 1.

Extended Data Figure 1.

FM Index alignment examples. (top) FM index alignment of a standard DNA sequence, where the size of each box represents the number of possible locations. (middle) FM alignment of a sequence where every position could be one of two bases. Base ambiguity is analogous to the k-mers we consider for every event. (bottom) Same as middle but alignments starting from all positions are found by filling in the gaps between ranges from previous alignments.