Table 1.
Nucleotide and putative amino acid sequence identity of the complete polyprotein sequences and L, P1-P3 regions between MuKV/XM34/XM86/YN27/CHN and other Kobuvirus reference sequences*
|
Gene region |
Rat |
Human |
Canine |
Feline |
||||
|---|---|---|---|---|---|---|---|---|
|
MuKV/XM86/CHN |
MuKV/YN27/CHN |
GZ85 |
Wencheng-Rt386-2 |
rat08/rAiA/HUN |
A846/88 |
CH-1 |
WHJ-1 |
|
|
MuKV/XM34/CHN |
||||||||
|
L |
99.0/98.8 |
89.4/94.2 |
89.9/93.0 |
88.4/90.7 |
84.5/87.2 |
64.7/60.5 |
57.3/51.2 |
57.3/48.8 |
|
P1 |
96.0/97.5 |
92.2/98.3 |
94.0/98.3 |
91.4/97.9 |
92.0/98.1 |
74.7/77.4 |
74.4/77.4 |
75.0/79.5 |
|
P2 |
98.3/99.3 |
93.8/97.9 |
94.6/98.2 |
94.2/98.2 |
94.5/98.7 |
77.9/82.5 |
79.8/85.3 |
78.6/84.9 |
|
P3 |
97.4/97.8 |
93.5/97.1 |
90.4/93.5 |
92.9/97.1 |
93.1/97.1 |
79.3/86.3 |
81.7/86.2 |
78.9/83.8 |
|
Polyprotein |
97.2/98.2 |
92.8/97.5 |
92.7/96.4 |
92.4/97.2 |
92.4/97.1 |
76.3/80.4 |
76.9/80.3 |
75.9/80.1 |
|
MuKV/XM86/CHN |
||||||||
|
L |
100/100 |
88.8/94.2 |
89.4/93.0 |
88.2/90.7 |
84.3/87.2 |
64.5/61.0 |
56.9/50.6 |
57.4/49.4 |
|
P1 |
100/100 |
91.0/96.7 |
91.9/96.5 |
90.6/96.3 |
90.9/96.4 |
74.0/76.3 |
73.9/76.5 |
74.6/78.6 |
|
P2 |
100/100 |
93.9/97.9 |
94.7/98.2 |
93.9/98.2 |
94.5/98.7 |
78.1/82.5 |
79.9/85.4 |
78.8/85.4 |
|
P3 |
100/100 |
93.3/97.7 |
91.0/94.5 |
93.6/97.8 |
93.5/97.9 |
79.7/86.7 |
82.0/86.4 |
79.4/84.4 |
|
Polyprotein |
100/100 |
92.3/97.1 |
92.1/96.0 |
92.2/96.9 |
92.2/96.8 |
76.3/80.1 |
76.8/80.1 |
76.0/80.1 |
|
MuKV/YN27/CHN |
||||||||
|
L |
88.8/94.2 |
100/100 |
92.3/96.5 |
90.5/94.2 |
86.5/90.7 |
63.5/62.2 |
59.2/51.2 |
56.3/48.3 |
|
P1 |
91.0/96.7 |
100/100 |
93.9/99.8 |
92.4/99.6 |
91.3/99.2 |
74.3/77.5 |
74.2/77.8 |
75.3/79.9 |
|
P2 |
93.9/97.9 |
100/100 |
95.4/98.9 |
93.6/98.7 |
93.5/98.5 |
78.0/82.8 |
79.9/85.1 |
78.8/84.8 |
|
P3 |
93.3/97.7 |
100/100 |
91.4/95.0 |
93.0/97.4 |
93.0/97.6 |
79.1/86.5 |
81.3/86.4 |
78.4/84.4 |
|
Polyprotein |
92.3/97.1 |
100/100 |
93.3/98.0 |
92.8/98.3 |
92.0/97.9 |
76.1/80.7 |
76.8/80.5 |
75.8/80.3 |
Values were described as nucleotide identity (%) /amino acid identity (%).
*Reference Kobuvirus sequences include: GZ85 (accession no. MN648601.1), Wencheng-Rt386–2 (accession no. MF352432.1), rat08/rAiA/HUN (accession no. MN116647.1), A846/88 (accession no. AB010145.1), CH-1 (accession no. JQ911763.1) and WHJ-1 (accession no. MF598159.1).