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. 2021 Nov 4;9:217. doi: 10.1186/s40168-021-01169-9

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 3 — Plant-associated bacterial community composition in different compartments between healthy and diseased plants. a Distribution and abundance of major bacterial phyla in different compartments of healthy and diseased plants. b Effect of fungal pathogen infection on bacterial community composition and the abundance of major bacterial phyla in different compartments. c Heat map of the bacterial community composition with cluster analysis. Similar samples were clustered horizontally, and vertical patterns illustrate the phylogenetic relationships among the top 40 bacterial genera across samples. HBS, healthy bulk soil; HRS, healthy rhizosphere; HR, healthy root; DBS, diseased bulk soil; DRS, diseased rhizosphere; DR, diseased root