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. 2021 Nov 4;22:304. doi: 10.1186/s13059-021-02522-9

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 5 — Multi-omics integrated analysis reveals the molecular basis of coconut plant height differences. a The leaf internode phenotype of Cn. tall and Cn. dwarf. b Genome-wide association analysis of the leaf internode phenotype of coconut. The upper panel shows the Manhattan plot of SNP-GWAS for leaf internode, and the lower panel shows copy number variation between Cn. tall and Cn. dwarf in chr12 chromosome, and the right panel is haplotype analysis of leaf spacing. P values were determined using two-tailed Student’s t test. c Images of Cn. tall and Cn. dwarf at seedling stage. d Comparison of height and GA20ox expression level by qRT-PCR between Cn. tall and Cn. dwarf. e Depiction of gibberellins metabolic pathway and gene expression bias between Cn. tall and Cn. dwarf. f Difference of gibberellin content in Cn. tall and Cn. dwarf. at seedling stage. g Optical microscope photographs of cells of Cn. tall and Cn. dwarf. h Differences in leaf cell length of Cn. tall and Cn. dwarf at seedling stage