Table 1.
Summary of genome assembly and annotation
Cn. tall | Cn. dwarf | |
---|---|---|
Number of contigs | 2433 | 401 |
Total size of contigs (bp) | 2,393,894,742 | 2,399,649,694 |
Longest contig | 34,251,876 | 56,639,188 |
Contig N50 count | 196 | 50 |
Contig N50 length (bp) | 2,927,039 | 14,296,645 |
Contig N90 count | 1044 | 177 |
Contig N90 length (bp) | 442,494 | 3,844,418 |
GC content | 37.49 | 37.57 |
Number of protein-coding genes | 29,897 | 28,111 |
Mean transcript length (bp) | 1698 | 1709 |
Mean exon length (bp) | 272 | 272 |
Mean exon per mRNA | 6.23 | 6.27 |
Total repetitive sequences size (% of genome) | 2,000,576,416 (83.55%) | 2,015,579,366 (84.00%) |