Table 3.
Represents the number and type of unique variations/substitutions in the nucleotide and amino acid of all the genes with respect to their position. Additionally, Synonymous mutation (SN) and Non-Synonymous mutation (NS) that were observed within the Indian BEFV isolate in comparison to globally available sequences are also summarized.
| Gene | Gene product | Unique nucleotide variation | Unique amino acid substitution | Substitution type with no. |
Substituted amino acid position and change |
||||
|---|---|---|---|---|---|---|---|---|---|
| SN | NS | SN |
NS |
||||||
| Position | Change | Position | Change | ||||||
| N | Nucleoprotein | 7 | 0 | 0 | 0 | – | – | – | – |
| P | Phosphoprotein | 14 | 9 | 5 | 4 | 59 | P/T→ A | 45 | E/R → G |
| 154 | V→I | 115 | S/L/F→ | ||||||
| 178 | I/V/P→L | 152 | P | ||||||
| 183 | N/R→K | 173 | S→L | ||||||
| 272 | I→V | K→N | |||||||
| M | Matrix protein | 0 | 0 | 0 | 0 | – | – | – | – |
| G | Glycoprotein | 3 | 1 | 1 | 0 | 18 | K → R | – | – |
| GNS | Non-structural Glycoprotein | 25 | 8 | 5 | 3 | 16 | T → N | 490 | E → G |
| 37 | L→ M | 514 | E → K | ||||||
| 177 | N→S | 520 | K → I | ||||||
| 380 | I → V | ||||||||
| 504 | L→V | ||||||||
| α1 | Alpha 1 protein | 4 | 2 | 2 | – | 51 | A→ V | – | – |
| 83 | K→ R | ||||||||
| α 2 | Alpha 2 protein | 4 | 1 | 1 | 0 | 40 | E→ D | – | – |
| β | Beta protein | 1 | 0 | 0 | 0 | – | – | – | – |
| γ | Gamma protein | 0 | 0 | 0 | 0 | – | – | – | – |
| L | Large subunit of polymerase protein | 18 | 10 | 6 | 4 | 12 | H→N | 1635 | K→E |
| 1099 | K→R | 1937 | K→N | ||||||
| 1564 | E→D | 2072 | G/E→R | ||||||
| 1766 | D→E | ||||||||
| 2044 | L→ I | ||||||||
| 2058 | K→R | ||||||||
| 2107 | K→Q | ||||||||
SN depicts synonymous mutation and NS shows non-synonymous mutation. All amino acid is denoted by its standard symbol used universally.