Antibodies |
|
Brilliant Violet 421™ anti-human CD3 (OKT3) |
Biolegend |
Cat# 317344; RRID:AB_2565849
|
Brilliant Violet 510™ anti-human CD8 (SK1) |
Biolegend |
Cat# 344732; RRID:AB_2564624
|
FITC anti-human HLA-DR (LN3) |
Biolegend |
Cat# 327006; RRID:AB_893569
|
PE anti-human CD 197 (CCR7) (G043H7) |
Biolegend |
Cat# 353204; RRID:AB_10913813
|
PerCPCy5.5 anti human CD4 (RPA-T4) |
Biolegend |
Cat# 300530; RRID:AB_893322
|
PE/Cy7 anti human CD45RA (HI100) |
Biolegend |
Cat# 304126; RRID:AB_10708879
|
APC anti-human CD38 (HB-7) |
Biolegend |
Cat# 356606; RRID:AB_2561902
|
PE anti-human CD183 (CXCR3) (G025H7) |
Biolegend |
Cat# 353706; RRID: AB_10962912
|
PE/Cy7 anti-human CD196 (CCR6) (G034E3) |
Biolegend |
Cat# 353418; RRID:AB_10916518
|
APC anti-human CD194 (CCR4) (L291H4) |
Biolegend |
Cat# 359408; RRID:AB_2562429
|
Brilliant Violet 421™ anti-human FOXP3 (206D) |
Biolegend |
Cat# 320124; RRID:AB_2565972
|
Brilliant Violet 510™ anti-human CD3 (SK7) |
Biolegend |
Cat# 344828; RRID:AB_2563704
|
PE anti-human CD279 (PD-1) (EH12.2H7) |
Biolegend |
Cat# 329906; RRID:AB_940483
|
PerCP/Cyanine5.5 anti-human IFN-γ (4S.B3) |
Biolegend |
Cat# 502526; RRID:AB_961355
|
APC anti-human CD57 (HNK-1) |
Biolegend |
Cat# 359610; RRID:AB_2562757
|
Brilliant Violet 421™ anti-human CD185 (CXCR5) (J252D4) |
Biolegend |
Cat# 356920; RRID:AB_2562303
|
PE anti-human CD25 (M-A251) |
Biolegend |
Cat# 356104; RRID:AB_2561861
|
APC anti-human CD127 (IL-7Rα) (A019D5) |
Biolegend |
Cat# 351316; RRID:AB_10900804
|
APC/Cyanine7 anti-human CD8a (RPA-T8) |
Biolegend |
Cat# 301016; RRID:AB_314134
|
Brilliant Violet 421™ anti-human CD366 (Tim-3) (F38-2E2) |
Biolegend |
Cat# 345008; RRID:AB_11218598
|
FITC anti-human CD223 (LAG-3) (11C3C65) |
Biolegend |
Cat# 369308; RRID:AB_2629751
|
PE anti-human KLRG1 (MAFA) (SA231A2) |
Biolegend |
Cat# 367712; RRID:AB_2572157
|
APC anti-human CD152 (CTLA-4) (BNI3) |
Biolegend |
Cat# 369612; RRID:AB_2632874
|
APC-Vio® 770 anti-human CD4 (VIT4) |
Miltenyi Biotec |
Cat# 130-096-652; RRID:AB_2660925
|
VioGreen® CD8 anti-human (BW135/80) |
Miltenyi Biotec |
Cat# 130-096-902; RRID:AB_2660905
|
VioGreen® CD20 anti-human (REA780) |
Miltenyi Biotec |
Cat#: 130-111-532; RRID:AB_2656069
|
VioGreen® CD14 anti-human (Tük4) |
Miltenyi Biotec |
Cat# 130-096-875; RRID:AB_2660175
|
FITC CD154 anti-human (5C8) |
Miltenyi Biotec |
Cat# 130-096-233; RRID:AB_10830229
|
CD40 Antibody, anti-human, pure-functional grade (HB14) |
Miltenyi Biotec |
Cat# 130-094-133; RRID:AB_10839704
|
Alexa Fluor® 488 Anti-CPT1A (8F6AE9) |
abcam |
Cat# ab171449; RRID:AB_2714024
|
Anti-IDH2 (EPR7577) |
abcam |
Cat# ab230796 |
Anti-Hexokinase 1 (EPR10134(B)) |
abcam |
Cat# ab233837 |
Anti-Glucose 6 Phosphate Dehydrogenase (EPR6292) |
abcam |
Cat# ab231828 |
Anti-Peroxiredoxin 2/PRP (EPR5154) |
abcam |
Cat# ab227988 |
PE Anti-Glucose Transporter GLUT1 (EPR3915) |
abcam |
Cat# ab209449 |
Alexa Fluor® 700 anti-human CD3 (SK7) |
Biolegend |
Cat# 344822; RRID:AB_2563420
|
Brilliant Violet 421™ anti-human CD14 (HCD14) |
Biolegend |
Cat# 325628; RRID:AB_2563296
|
Brilliant Violet 510™ anti-human CD19 (HIB19) |
Biolegend |
Cat# 302242; RRID:AB_2561668
|
BUV395 Mouse anti-human CD4 (SK3 (Leu3a)) |
BD Biosciences |
Cat# 563552; RRID:AB_2738275
|
APC-eFluor 780 anti-human CD8a (SK1) |
ThermoFisher Scientific |
Cat# 47-0087-42; RRID:AB_2016684
|
Brilliant Violet 785™ anti-human CD56 (NCAM) (5.1H11) |
Biolegend |
Cat# 362550; RRID:AB_2566059
|
Brilliant Violet 650™ anti-human CD45RO (UCHL1) |
Biolegend |
Cat# 304232; RRID:AB_2563462
|
Brilliant Violet 605™ anti-human CD62L (DREG-56) |
Biolegend |
Cat# 304834; RRID:AB_2562130
|
|
Chemicals, peptides, and recombinant proteins |
|
PepTivator® EBV EBNA-1, human |
Miltenyi Biotec |
Cat# 130-093-613 |
PepTivator® EBV LMP2A, human |
Miltenyi Biotec |
Cat# 130-093-615 |
PepTivator® EBV BZLF1, human |
Miltenyi Biotec |
Cat# 130-093-611 |
Human AB serum |
Sigma Aldrich |
Cat# H4522 |
Brefeldin A |
Sigma Aldrich |
Cat# B5936 |
Sodium pyruvate |
Thermo Fisher Scientific |
Cat# BP356-100 |
L-Glutamine |
Thermo Fisher Scientific |
Cat# 25030081 |
Glucose |
Sigma Aldrich |
Cat# G7528 |
Methyl tert-butyl ether (MTBE) |
Biosolve Chemicals |
Cat# 13890602 |
Derivatization reagents for GC (MSTFA) |
Macherey-Nagel |
Cat# 701270.510 |
ULC/MS grade Acetonitrile |
Biosolve Chemicals |
Cat# 01204102 |
Acetic acid glacial ULC/MS |
Biosolve Chemicals |
Cat# 01074131 |
ULC/MS grade Water |
Biosolve Chemicals |
Cat# 23214102 |
|
Critical commercial assays |
|
Seahorse XF Cell Mito Stress Test Kit |
Agilent Technologies |
Cat# 103015-100 |
Seahorse XF Base Medium |
Agilent Technologies |
Cat# 102353-100 |
Seahorse Calibrant Solution |
Agilent Technologies |
Cat# 100840-000 |
Seahorse XFe96 FluxPak |
Agilent Technologies |
Cat# 102416-100 |
RNeasy Plus Mini Kit |
Qiagen |
Cat# 74134 |
RevertAid H Minus First Strand cDNA Synthesis Kit |
Thermo Fisher Scientific |
Cat# K1632 |
TaqMan® Gene Expression Assay |
Thermo Fisher Scientific |
Cat# 4331182 |
CD154 MicroBead Kit, human |
Miltenyi Biotec |
Cat# 130-092-658 |
CD3 MicroBeads, human |
Miltenyi Biotec |
Cat# 130-050-101 |
CD14 MicroBeads, human |
Miltenyi Biotec |
Cat# 130-050-201 |
LS columns |
Miltenyi Biotec |
Cat# 130-042-401 |
MS columns |
Miltenyi Biotec |
Cat# 130-042-201 |
LIVE/DEAD® Fixable Aqua Dead Cell Stain Kit |
Thermo Fisher Scientific |
Cat# L34957
|
Zombie UV™ Fixable Viability Kit |
Biolegend |
Cat# 423107 |
Zombie NIR™ Fixable Viability Kit |
Biolegend |
Cat# 423106 |
Fixation/Permeablization Kit |
BD Biosciences |
Cat# 554714; RRID:AB_2869008
|
eBioscience™ Foxp3 / Transcription Factor Staining Buffer Set |
ThermoFisher Scientific |
Cat# 00-5523-00 |
PE/Cy7® Conjugation Kit - Lightning-Link® |
abcam |
Cat# ab102903 |
PerCP/Cy5.5® Conjugation Kit - Lightning-Link® |
abcam |
Cat# ab102911 |
PE/Atto 594 Conjugation Kit - Lightning-Link® |
abcam |
Cat# ab269900 |
Alexa Fluor® 647 Conjugation Kit (Fast) - Lightning-Link® |
abcam |
Cat# ab269823 |
|
Software and algorithms |
|
BD FACSDiva version 6.1.2 |
BD Biosciences |
RRID:SCR_001456 |
FlowJo 10.1 |
Treestar Inc., USA |
RRID:SCR_008520 |
GraphPad Prism 7 |
GraphPad Software Inc., USA |
RRID:SCR_002798 |
Wave Desktop 2.3 |
Agilent Technologies |
RRID:SCR_014526 |
R Version 4.0.5 |
R Project for Statistical Computing |
RRID:SCR_001905 |
Leco Chroma-TOF-GC Software v4.50.8.0 |
LECO |
N/A; https://www.leco.com/product/chromatof-software
|
Python Programming Language 3.8.5 |
http://www.python.org/ |
RRID:SCR_008394 |
MatPlotLib 3.3.1 |
http://matplotlib.sourceforge.net |
RRID:SCR_008624 |
NumPy 1.19.1 |
http://www.numpy.org |
RRID:SCR_008633 |
Pandas 1.1.3 |
https://pandas.pydata.org |
RRID:SCR_018214 |
SciPy 1.5.2 |
http://www.scipy.org/ |
RRID:SCR_008058 |
Seaborn 0.11.0 |
https://seaborn.pydata.org/ |
RRID:SCR_018132 |
Statsmodel 0.12.0 |
http://www.statsmodels.org/ |
RRID:SCR_016074 |
|
Other |
|
ACQUITY UPLC HSS T3 Column |
Waters |
Cat# 176001132 |
ACQUITY UPLC BEH C8 Column |
Waters |
Cat# 176000885 |