REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Deposited data | ||
BICCN atlas of the mouse primary motor cortex | Yao et al. 2021a | NEMO: dat-ch1nqb7; RRID: SCR_016152 |
Transcriptomic data for the isocortex and hippocampus | Yao et al. 2021b | NEMO: dat-jb2f34y |
Full marker lists for BICCN cell types | This paper | https://doi.org/10.6084/m9.figshare.13348064.v2 |
Software and algorithms | ||
MetaMarkers | This paper | https://github.com/gillislab/MetaMarkers |
MetaNeighbor | Crow et al. 2018 | https://github.com/gillislab/MetaNeighbor |
nnls R package | Mullen and van Stokkum 2012 | https://CRAN.R-project.org/package=nnls |
org.Mm.eg.db R package | Carlson 2019b |
https://doi.org/10.18129/B9.bioc.org.Mm.eg.db; http://bioconductor.org/packages/org.Mm.eg.db/ |
GO.db R package | Carlson 2019a |
https://doi.org/10.18129/B9.bioc.GO.db; http://bioconductor.org/packages/GO.db/ |