Table 2.
SCDC deconvolution results based on simulated bulk RNA-seq from SCDC GEPs on pancreatic islets reference scRNA-seq from Segerstolpe2016
| Cell type | Pearson correlation | RMSD | mAD |
|---|---|---|---|
| blood vessel endothelial cell | 0.68 | 0.017 | 0.010 |
| enteroendocrine cell | 0.52 | 0.064 | 0.047 |
| fibroblast | 0.87 | 0.020 | 0.017 |
| macrophage | 0.98 | 0.004 | 0.002 |
| pancreatic A cell | 0.97 | 0.043 | 0.033 |
| pancreatic acinar cell | 0.99 | 0.049 | 0.024 |
| pancreatic D cell | 0.88 | 0.023 | 0.018 |
| pancreatic ductal cell | 0.83 | 0.075 | 0.043 |
| PP cell | 0.87 | 0.041 | 0.033 |
| type B pancreatic cell | 0.94 | 0.055 | 0.040 |