Table 3.
SCDC deconvolution results based on simulated bulk RNA-seq from SCDC GEPs on hematopoietic reference CITE-seq data from Kotliarov2020
Cell type | Pearson correlation | RMSD | mAD |
---|---|---|---|
B cells | 0.98 | 0.009 | 0.007 |
CD4 T cells | 0.79 | 0.075 | 0.062 |
CD8 T cells | 0.90 | 0.021 | 0.016 |
classical monocytes | 0.99 | 0.014 | 0.011 |
DN T cells | 0.13 | 0.078 | 0.058 |
ILCs | 0.81 | 0.031 | 0.024 |
mDCs | 0.75 | 0.009 | 0.008 |
non-classical monocytes | 0.81 | 0.009 | 0.007 |
not determined | 0.56 | 0.033 | 0.026 |
pDCs | 0.61 | 0.003 | 0.002 |