Table 1.
Orthology sources in HCOP
| Orthology source | Version | Species data applies to |
|---|---|---|
| eggNOG | Version 5.0 | All species except horse |
| Ensembl | Release 102 | All species |
| HGNC | N/A | Human and mouse |
| HomoloGene | Release 68 | Human, chimp, macaque, mouse, rat, dog, cow, chicken, xenopus, zebrafish, C. elegans, fruit fly, S. cerevisiae and S. pombe |
| InParanoid | Version 8.0 | All species |
| OMA | Release January 2020 | All species |
| OrthoDB | Version 10.1 | Human, chimp, macaque, mouse, rat, dog, cat, horse, cow, pig, opossum, platypus, chicken, anole lizard, xenopus, zebrafish, C. elegans and fruit fly |
| OrthoMCL | Version 5 | Human, mouse, dog, chicken, zebrafish, C. elegans, fruit fly, S. cerevisiae and S. pombe |
| NCBI Gene orthologs | N/A | All species except C. elegans, fruit fly, S. cerevisiae and S. pombe |
| Panther | Version 15 | All species |
| PhylomeDB | Version 4, data are taken from phylome 514 | Human, chimp, macaque, mouse, rat, dog, cow, opossum, platypus, chicken, xenopus, zebrafish, C. elegans, fruit fly, S. cerevisiae and S. pombe |
| PomBase | N/A | Human and S. pombe |
| TreeFam | Release 9.0 | All species except cat, S. cerevisiae and S. pombe |
| ZFIN | N/A | Human and zebrafish |